install-medco-cell.sh
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			#!/usr/bin/env bash
			set -Eeuo pipefail

			# get medco cell sources
			pushd "$MEDCO_CELL_SRC_DIR"
			git clone --depth 1 --branch $MEDCO_CELL_VERSION https://c4science.ch/source/medco-i2b2-cell.git .

			# compile and deploy
			sed -i "/jboss.home/c\jboss.home=$JBOSS_HOME" build.properties
			sed -i "/medco.unlynx.groupfilepath/c\medco.unlynx.groupfilepath=$MEDCO_CONF_DIR/group.toml" etc/spring/medcoapp/medco.properties
			sed -i "/medco.unlynx.binarypath/c\medco.unlynx.binarypath=$MEDCO_CONF_DIR/unlynxMedCo" etc/spring/medcoapp/medco.properties
			ant -f build.xml clean all deploy
			popd

medco-deployment/docker-images/i2b2-medco/install-medco-cell.she0198a7c2effshrineremoved