Homec4science
Diffusion MedCo Deployment (shrineremoved) Browse

medco-deployment/docker-images/i2b2-server/patches/ontology_pg_db_fix2.diff
986c103a404bshrineremoved

Last Change
Raw File

ontology_pg_db_fix2.diff
View Options

diff --git a/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/loader/dao/UploadStatusDAO.java b/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/loader/dao/UploadStatusDAO.java
index 7642920..4361246 100755
--- a/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/loader/dao/UploadStatusDAO.java
+++ b/edu.harvard.i2b2.crc/src/server/edu/harvard/i2b2/crc/loader/dao/UploadStatusDAO.java
@@ -86,7 +86,27 @@ public class UploadStatusDAO extends CRCLoaderDAO implements UploadStatusDAOI {
public void dropTempTable(String tempTable) {
final String sql = "{call " + getDbSchemaName()
+ "REMOVE_TEMP_TABLE(?)}";
- jdbcTemplate.update(sql, new Object[] { tempTable });
+
+ Connection conn = null;
+ try {
+ conn = getDataSource().getConnection();
+ CallableStatement callStmt = conn.prepareCall(sql);
+ callStmt.setString(1, tempTable);
+ callStmt.execute();
+ } catch (SQLException e) {
+ e.printStackTrace();
+ log.error("Error while execuring sql", e);
+ } finally {
+ if (conn != null) {
+ try {
+ conn.close();
+ } catch (SQLException sqlEx) {
+ sqlEx.printStackTrace();
+ log.error("Error while closing connection", sqlEx);
+ }
+ }
+ }
+
}
/**
@@ -523,7 +543,8 @@ public class UploadStatusDAO extends CRCLoaderDAO implements UploadStatusDAOI {
+ " transform_name) "
+ " VALUES(?,?,?,?,?,?,?,?,?,?,?,?,?)";
} else if (dataSourceLookup.getServerType().equalsIgnoreCase(
- LoaderDAOFactoryHelper.ORACLE)) {
+ LoaderDAOFactoryHelper.ORACLE) || dataSourceLookup.getServerType().equalsIgnoreCase(
+ LoaderDAOFactoryHelper.POSTGRESQL)) {
sql = "INSERT INTO " + schemaName + "upload_status ("
+ " upload_id," + " upload_label, " + " user_id, "
+ " source_cd, " + " no_of_record, "
@@ -537,7 +558,8 @@ public class UploadStatusDAO extends CRCLoaderDAO implements UploadStatusDAOI {
this.setDataSource(dataSource);
if (dataSourceLookup.getServerType().equalsIgnoreCase(
- LoaderDAOFactoryHelper.ORACLE)) {
+ LoaderDAOFactoryHelper.ORACLE) || dataSourceLookup.getServerType().equalsIgnoreCase(
+ LoaderDAOFactoryHelper.POSTGRESQL)) {
declareParameter(new SqlParameter(Types.INTEGER));
}
declareParameter(new SqlParameter(Types.VARCHAR));
@@ -593,6 +615,25 @@ public class UploadStatusDAO extends CRCLoaderDAO implements UploadStatusDAOI {
uploadStatus.getTransformName() };
update(objs);
uploadId = getJdbcTemplate().queryForInt("SELECT @@IDENTITY");
+ } else if (dataSourceLookup.getServerType().equalsIgnoreCase(
+ LoaderDAOFactoryHelper.POSTGRESQL)) {
+
+ uploadId = getJdbcTemplate().queryForInt(
+ "select nextval('upload_status_upload_id_seq')");
+ uploadStatus.setUploadId(uploadId);
+ objs = new Object[] { uploadStatus.getUploadId(),
+ uploadStatus.getUploadLabel(),
+ uploadStatus.getUserId(), uploadStatus.getSourceCd(),
+ uploadStatus.getNoOfRecord(),
+ uploadStatus.getDeletedRecord(),
+ uploadStatus.getLoadedRecord(),
+ uploadStatus.getLoadDate(), uploadStatus.getEndDate(),
+ uploadStatus.getLoadStatus(),
+ uploadStatus.getInputFileName(),
+ uploadStatus.getLogFileName(),
+ uploadStatus.getMessage(),
+ uploadStatus.getTransformName() };
+ update(objs);
}
uploadStatus.setUploadId(uploadId);
c4science · Help