Diffusion MedCo Deployment (master) History

History
mastercc2b8f55000cb71c452d715…

Nov 1 2017

disable authorization steward
cdc175866d21
·mickmis on Nov 1 2017, 15:52.
try config diff. for steward
1a7379b699f0
·mickmis on Nov 1 2017, 15:12.
fix DB issues (upload_id
b6b5347eaeb7
·mickmis on Nov 1 2017, 10:51.
remove alias map configuration
e5ba7fccad60
·mickmis on Nov 1 2017, 10:51.

Oct 31 2017

fix db users projects + potentially topic approved
5cf2a1b532e1
·mickmis on Oct 31 2017, 21:56.
split into 2 users
143ed1417e0a
·mickmis on Oct 31 2017, 21:35.
i2b2 rebuild
b4568aee3c45
·mickmis on Oct 31 2017, 17:42.
i2b2 rebuild
21ae38e2d115
·mickmis on Oct 31 2017, 17:38.
ignore unlynx binary
6e103bb4fbdd
·mickmis on Oct 31 2017, 17:38.
trust model changed
e5699564587f
·mickmis on Oct 31 2017, 16:56.
keys another attempt
cd66ef9eaef8
·mickmis on Oct 31 2017, 13:55.
shrine version key
69efaba652b2
·mickmis on Oct 31 2017, 11:29.
shrine test case into account
03af0852a113
·mickmis on Oct 31 2017, 11:04.
add shrine test query support
b191a8b1bb29
·mickmis on Oct 31 2017, 10:37.

Oct 30 2017

fix conf
46d3ec3407a0
·mickmis on Oct 30 2017, 23:07.
cosmetic changes
4e0da3e4d0e7
·mickmis on Oct 30 2017, 22:30.
Revert "shrine configuration modifications"
0ae11f3decf3
·mickmis on Oct 30 2017, 22:25.
Revert "shrine configuration modifications"
c7e5cce9ddff
·mickmis on Oct 30 2017, 22:25.
shrine configuration modifications
7d3483df347b
·mickmis on Oct 30 2017, 22:00.
shrine configuration modifications
7dc1adc723c7
·mickmis on Oct 30 2017, 21:48.
attempt at fix
312372be9345
·mickmis on Oct 30 2017, 21:23.
attempt at fix
35461f95b9a9
·mickmis on Oct 30 2017, 20:34.
attempt at fix
9ea36ee94c82
·mickmis on Oct 30 2017, 19:28.
attempt at fix
01c859e91145
·mickmis on Oct 30 2017, 19:08.
temporary fix for niccolo
ed89c02e5f82
·mickmis on Oct 30 2017, 16:56.
temporary fix for niccolo
02d12da1c0fd
·mickmis on Oct 30 2017, 16:53.
add keystores
aa1d6895fbb8
·mickmis on Oct 30 2017, 16:29.
fix forgotten keystore path modfiication
50f3cf0dbc12
·mickmis on Oct 30 2017, 16:27.
fix forgotten keystore path modfiication
b25826a7294c
·mickmis on Oct 30 2017, 16:24.
fix forgotten keystore path modfiication
4d725b2ab5cb
·mickmis on Oct 30 2017, 16:18.
shrine: modify keys to have different keystores per nodes -- different way +…
54bd6a63c00c
·mickmis on Oct 30 2017, 16:13.
shrine docker: optimize caching
0be40d91b825
·mickmis on Oct 30 2017, 15:58.
shrine: modify keys to have different keystores per nodes
5428ea3a35c3
·mickmis on Oct 30 2017, 15:57.
fix another configuration ommited
a0a757a838cb
·mickmis on Oct 30 2017, 15:05.
fix new topic url in webclient
0c2ed21f2356
·mickmis on Oct 30 2017, 14:38.
added shrine users configuration
26a273c1444a
·mickmis on Oct 30 2017, 14:01.
update i2b2 database: pm data now manually loaded to have full medco data
b86d0b772911
·mickmis on Oct 30 2017, 10:54.

Oct 27 2017

disable steward in shrine configuration
233762ead402
·mickmis on Oct 27 2017, 16:21.
fix shrine server configuration
f3cdbdb3efbe
·mickmis on Oct 27 2017, 16:09.
Merge branch 'shrineintegration' of ssh://c4science.ch/source/medco-deployment…
2ee9781c2bf4
·mickmis on Oct 27 2017, 14:55.
add mandatory undocumented configuration aliasMap to shrine
192f390c67ca
·mickmis on Oct 27 2017, 14:54.
add mandatory undocumented configuration aliasMap to shrine
79fa4ba672af
·mickmis on Oct 27 2017, 11:32.
update shrine configuration (trust model>peer to peer)
8a4b6f3ca331
·mickmis on Oct 27 2017, 11:05.
fix shrine-server config file
5b86bafb133f
·mickmis on Oct 27 2017, 10:05.
fix database structure
087ea777418e
·mickmis on Oct 27 2017, 09:45.

Oct 26 2017

update shrine-database dockerfile
812ceefb27ec
·mickmis on Oct 26 2017, 18:17.
remove shrine-server patches, modify shrine sources instead
82e25c7a9b84
·mickmis on Oct 26 2017, 17:36.
fix ddl file with changed name
94312fe277a4
·mickmis on Oct 26 2017, 16:22.
fix shrine database init script
ba8c5b3daf8c
·mickmis on Oct 26 2017, 16:06.
fix shrine database initialization script
8be2faa271bd
·mickmis on Oct 26 2017, 15:34.
fix shrine dockerfile: configuration setup
a6bd063ca359
·mickmis on Oct 26 2017, 14:09.
fix variables syntax in config file
aaf3228b5a45
·mickmis on Oct 26 2017, 13:53.
docker compose profiles and configuration updates for shrine (only dev-3nodes…
b0261409dc47
·mickmis on Oct 26 2017, 10:14.
updates to docker definitions of i2b2 server, database, unlynx
9ab2d08b3a79
·mickmis on Oct 26 2017, 10:12.
docker definitions of shrine database and server
582fcee9a832
·mickmis on Oct 26 2017, 10:10.

Oct 9 2017

added EULA license
34456bf05508
·raisaro on Oct 9 2017, 11:04.

Sep 22 2017

100x and 1000x experiments ; PL/pgSQL script to duplicate data
dee810945ff7
·mickmis on Sep 22 2017, 09:37.

Sep 21 2017

update adresses in key files
eda1591ca27e
·mickmis on Sep 21 2017, 11:25.

Sep 20 2017

experiments network traffic
82641c019d6f
·mickmis on Sep 20 2017, 19:15.
add genopri2017 experiments results: all 6, 9, loading
62ce15dae441
·mickmis on Sep 20 2017, 17:28.
update keys for new iccluster servers
f631d6f03fa3
·mickmis on Sep 20 2017, 17:26.
add genopri2017 experiments results: all 3 nodes, 10 nodes, loading
bddee97b21aa
·mickmis on Sep 20 2017, 15:22.
add compose profiles and keys for exp-{6|9|10}nodes-icclusters
a36b88d16ef5
·mickmis on Sep 20 2017, 10:31.

Sep 19 2017

add data x2, x4 profiles for experiments
50a9f49fd01b
·mickmis on Sep 19 2017, 15:03.
unlynx configuration experiment with new servers
a568b58f5017
·mickmis on Sep 19 2017, 09:58.

Sep 15 2017

unlynx debug level = 1
ac4003f0bc3b
·mickmis on Sep 15 2017, 13:42.
onet cothority: fix too big packet error
df319d938ace
·mickmis on Sep 15 2017, 13:40.
unlynx server debug lvl control
76e4c9c5d676
·mickmis on Sep 15 2017, 13:20.
enable unlynx debug
531e0884bafc
·mickmis on Sep 15 2017, 13:11.
fix shrine modifications of i2b2 db
95bd245e19f4
·mickmis on Sep 15 2017, 11:22.
add shrine modifications of i2b2 db
c87da17f2743
·mickmis on Sep 15 2017, 11:16.
add exp-3nodes-icclusters datax1 compose profile
b98a03a7b59b
·mickmis on Sep 15 2017, 10:54.
make log levels controlable with docker build arguments
11ade3f0af1a
·mickmis on Sep 15 2017, 10:49.
deprecate old configurations
39d472317a4d
·mickmis on Sep 15 2017, 10:47.
remove unlynx binary
c7b35fbdd605
·mickmis on Sep 15 2017, 10:46.
axis2 log lvl to info; add unlynx debug lvl control
937a1b255433
·mickmis on Sep 15 2017, 10:21.

Sep 13 2017

i2b2 docker: control axis2 debug level ; unlynx docker: add pre-downloaded…
45bde28f28b0
·mickmis on Sep 13 2017, 09:39.

Sep 12 2017

docker compose dev: i2b2-servers join the cothority network
ccae0fd77656
·mickmis on Sep 12 2017, 16:18.
bug fix: entrypoint idx dockerfile build argument
edbfc84f7e0a
·mickmis on Sep 12 2017, 14:17.

Sep 11 2017

add temporary medco-i2b2 deployment for dev by niccolo
0b061b2a2b71
·mickmis on Sep 11 2017, 18:29.
unlynx dockerfile: add parameter for ddt secrets through environment variable
24a6031261f9
·mickmis on Sep 11 2017, 17:36.
bug fix: rename binary of unlynx client
70f3c68cc926
·mickmis on Sep 11 2017, 14:36.
remove unlynx binary and add it to the gitignore (regenerated at each run)
8268a994d86c
·mickmis on Sep 11 2017, 13:33.
update gitignore for mac ds_store
3fc7c1a7234e
·mickmis on Sep 11 2017, 11:40.
remove ds_store
9275d706e10f
·mickmis on Sep 11 2017, 11:39.
Merge branch 'master' of ssh://c4science.ch/source/medco-deployment
fcdfa9b01d24
·mickmis on Sep 11 2017, 11:37.
add genomic_annotations table in the shrine ontology schema
26953f403717
·mickmis on Sep 11 2017, 11:37.

Sep 5 2017

Some minor changes
9a6367c61836
·JoaoAndreSa on Sep 5 2017, 12:01.
Merged changes
a4f24f650527
·JoaoAndreSa on Sep 5 2017, 09:57.
Updated the branch in the dockerfile
1f3db49d5d3e
·JoaoAndreSa on Sep 5 2017, 09:55.

Sep 4 2017

add automatic export at runtime of medco binary
ffd706d9c134
·mickmis on Sep 4 2017, 16:00.
modifications to DB schemas for medco normal
0a0b24958666
·mickmis on Sep 4 2017, 15:59.

Aug 11 2017

deprecate some SQL in the structure modifications
8ac4288a7fa0
·mickmis on Aug 11 2017, 17:10.
sql example set: formatting + description modifications
87f153252069
·mickmis on Aug 11 2017, 16:59.
modifications DB structure + example SQL statements: rename some schemes code…
962ee5abe5a4
·mickmis on Aug 11 2017, 16:54.

Aug 10 2017

add set of example sql statement for loading, includingg documentation
9b2463797daa
·mickmis on Aug 10 2017, 18:26.
modifications for full i2b2 db integration
eaa7c483632e
·mickmis on Aug 10 2017, 18:24.
phppgadmin: enable pg_dump for exports
84172b70f59c
·mickmis on Aug 10 2017, 18:19.

Aug 9 2017

dockerfiles: updated repos, optimized arguments and environment declarations…
73fb87f20e87
·mickmis on Aug 9 2017, 10:41.
docker-compose common configuration + development deployment functional again
8db647e13c46
·mickmis on Aug 9 2017, 10:40.

Historymastercc2b8f55000cb71c452d715…

Nov 1 2017

Oct 31 2017

Oct 30 2017

Oct 27 2017

Oct 26 2017

Oct 9 2017

Sep 22 2017

Sep 21 2017

Sep 20 2017

Sep 19 2017

Sep 15 2017

Sep 13 2017

Sep 12 2017

Sep 11 2017

Sep 5 2017

Sep 4 2017

Aug 11 2017

Aug 10 2017

Aug 9 2017

History
mastercc2b8f55000cb71c452d715…