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F88671454
i2b2_medco.xsd
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Created
Sun, Oct 20, 02:24
Size
3 KB
Mime Type
text/xml
Expires
Tue, Oct 22, 02:24 (1 d, 23 h)
Engine
blob
Format
Raw Data
Handle
21805552
Attached To
R4434 MedCo I2b2 Cell
i2b2_medco.xsd
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<?xml version="1.0" encoding="UTF-8"?>
<xs:schema
xmlns:xs=
"http://www.w3.org/2001/XMLSchema"
xmlns:medco=
"http://lca1.epfl.ch/xsd/medco/i2b2/"
targetNamespace=
"http://lca1.epfl.ch/xsd/medco/i2b2/"
>
<!-- metadata -->
<xs:element
name=
"medco_metadata_request"
type=
"xs:string"
fixed=
""
/>
<xs:element
name=
"medco_metadata"
type=
"medco:medco_metadataType"
/>
<xs:complexType
name=
"medco_metadataType"
>
<xs:sequence>
<xs:element
name=
"genomic_annotations_metadata"
type=
"medco:genomic_annotations_metadataType"
/>
<xs:element
name=
"clinical_ontology_metadata"
type=
"medco:clinical_ontology_metadataType"
/>
</xs:sequence>
</xs:complexType>
<xs:complexType
name=
"genomic_annotations_metadataType"
>
<xs:all>
<xs:element
name=
"nice_name"
type=
"xs:string"
/>
<xs:element
name=
"unique_name"
type=
"xs:string"
/>
<xs:element
name=
"description"
type=
"xs:string"
/>
<xs:element
name=
"attributes"
>
<xs:complexType>
<xs:sequence>
<xs:element
name=
"attribute"
type=
"medco:genomic_annotations_attributeType"
maxOccurs=
"unbounded"
/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element
name=
"identifying_attributes_unique_name"
>
<xs:complexType>
<!-- add variant id structure / how to construct TODO -->
<xs:all>
<xs:element
name=
"chromosome_nb"
type=
"xs:string"
/>
<xs:element
name=
"start_position"
type=
"xs:string"
/>
<xs:element
name=
"ref_allele"
type=
"xs:string"
/>
<xs:element
name=
"alt_allele"
type=
"xs:string"
/>
</xs:all>
</xs:complexType>
</xs:element>
</xs:all>
</xs:complexType>
<xs:complexType
name=
"genomic_annotations_attributeType"
>
<xs:all>
<xs:element
name=
"nice_name"
type=
"xs:string"
/>
<xs:element
name=
"unique_name"
type=
"xs:string"
/>
<xs:element
name=
"origin"
type=
"xs:string"
/>
</xs:all>
<xs:attribute
name=
"encrypted"
type=
"xs:boolean"
use=
"required"
/>
<xs:attribute
name=
"type"
type=
"medco:data_typesType"
use=
"required"
/>
</xs:complexType>
<xs:simpleType
name=
"data_typesType"
>
<xs:restriction
base=
"xs:token"
>
<xs:enumeration
value=
"STRING"
/>
<xs:enumeration
value=
"BOOL"
/>
<xs:enumeration
value=
"INT8"
/>
<xs:enumeration
value=
"INT16"
/>
<xs:enumeration
value=
"INT32"
/>
<xs:enumeration
value=
"INT64"
/>
<xs:enumeration
value=
"FLOAT32"
/>
<xs:enumeration
value=
"FLOAT64"
/>
</xs:restriction>
</xs:simpleType>
<xs:complexType
name=
"clinical_ontology_metadataType"
>
<xs:all>
<xs:element
name=
"nice_name"
type=
"xs:string"
/>
<xs:element
name=
"unique_name"
type=
"xs:string"
/>
<xs:element
name=
"description"
type=
"xs:string"
/>
<xs:element
name=
"project_path"
type=
"xs:string"
/>
<!-- XXX check if sth else is needed -->
</xs:all>
</xs:complexType>
</xs:schema>
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