Homec4science
Diffusion MedCo I2b2 Cell (master) Browse

medco-i2b2-cell/src/server/ch/epfl/lca1/medco/axis2/MedCoQueryRequestDelegate.java
5ab1a30d0cacmaster

Last Change
Raw File

MedCoQueryRequestDelegate.java
View Options

/*
* Copyright (c) 2006-2007 Massachusetts General Hospital
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the i2b2 Software License v1.0
* which accompanies this distribution.
*
* Contributors:
* Rajesh Kuttan
*/
package ch.epfl.lca1.medco.axis2;
import ch.epfl.lca1.medco.StandardQuery;
import ch.epfl.lca1.medco.i2b2.crc.I2B2QueryResponse;
import ch.epfl.lca1.medco.util.Logger;
import ch.epfl.lca1.medco.util.MedCoUtil;
import edu.harvard.i2b2.common.util.jaxb.JAXBUtilException;
import edu.harvard.i2b2.crc.datavo.i2b2message.*;
import ch.epfl.lca1.medco.util.exceptions.MedCoException;
import ch.epfl.lca1.medco.i2b2.crc.I2B2QueryRequest;
import edu.harvard.i2b2.common.exception.I2B2Exception;
import java.io.PrintWriter;
import java.io.StringWriter;
/**
* Setfinder query request delegate class $Id: QueryRequestDelegate.java,v 1.17
* 2008/05/08 15:13:45 rk903 Exp $
*
* @author rkuttan
*/
// todo: no authentication done for now, implement!
public class MedCoQueryRequestDelegate extends RequestHandlerDelegate {
protected static edu.harvard.i2b2.crc.datavo.i2b2message.ObjectFactory i2b2OF =
new edu.harvard.i2b2.crc.datavo.i2b2message.ObjectFactory();
protected static MedCoUtil medCoUtil = MedCoUtil.getInstance();
// todo: hardcoded, should be taken from the PM
public static final String clientPubKey = "eQviK90cvJ2lRx8ox6GgQKFmOtbgoG9RXa7UnmemtRA=";
public static final String clientSeckey = "iqLQz3zMlRjCyBrg4+303hsxL7F5vDtIaBxO0oc7gQA=";
/**
*/
public String handleRequest(String requestString) throws I2B2Exception {
Logger.info("Handling new MedCo query request");
try {
I2B2QueryRequest request = new I2B2QueryRequest(requestString);
//I2B2Cell.authenticate(xx); // returns objects with infos about request
StandardQuery medcoQuery = new StandardQuery(request, medCoUtil.getUnlynxBinPath(), medCoUtil.getUnlynxGroupFilePath(),
medCoUtil.getUnlynxDebugLevel(), medCoUtil.getUnlynxEntryPointIdx(), medCoUtil.getUnlynxProofsFlag(),
medCoUtil.getI2b2Waittimems(), medCoUtil.getDataRepositoryCellUrl(), medCoUtil.getProjectManagementCellUrl());
int resultMode = 0;
int timeoutSeconds = MedCoUtil.getInstance().getI2b2Waittimems();//todo: from configuration add entry specific to unlynx
I2B2QueryResponse queryAnswer = medcoQuery.executeQuery();
StringWriter strWriter = new StringWriter();
MedCoUtil.getMsgUtil().marshallerWithCDATA(i2b2OF.createResponse(queryAnswer), strWriter,
new String[]{"observation_blob","patient_blob","observer_blob","concept_blob","event_blob"});
return strWriter.toString();
} catch (MedCoException | I2B2Exception | JAXBUtilException e) {
Logger.error("Error during query", e);
ResponseMessageType errorResponse = i2b2OF.createResponseMessageType();
ResponseHeaderType respHeader = i2b2OF.createResponseHeaderType();
errorResponse.setResponseHeader(respHeader);
InfoType info = i2b2OF.createInfoType();
respHeader.setInfo(info);
// detailed error message
StringWriter infoMessage = new StringWriter();
PrintWriter exceptionPrint = new PrintWriter(infoMessage);
infoMessage.append("Exception:" + e.getMessage() + "\n");
e.printStackTrace(exceptionPrint);
infoMessage.append("Caused by: " + (e.getCause() == null ? "no cause" : e.getCause().getMessage()) + "\n");
e.getCause().printStackTrace(exceptionPrint);
info.setValue(infoMessage.toString());
try {
StringWriter strWriter = new StringWriter();
MedCoUtil.getMsgUtil().marshallerWithCDATA(i2b2OF.createResponse(errorResponse), strWriter,
new String[]{"observation_blob", "patient_blob", "observer_blob", "concept_blob", "event_blob"});
return strWriter.toString();
} catch (Throwable e1) {
Logger.error("Error while generating error message", e);
}
}
// all hope lost at this point
return null;
}
}
c4science · Help