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i2b2_medco.xsd
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Sat, Aug 17, 02:07

i2b2_medco.xsd
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<?xml version="1.0" encoding="UTF-8"?>
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
xmlns:medco="http://lca1.epfl.ch/xsd/medco/i2b2/"
targetNamespace="http://lca1.epfl.ch/xsd/medco/i2b2/">
<!-- metadata -->
<xs:element name="medco_metadata_request" type="xs:string" fixed=""/>
<xs:element name="medco_metadata" type="medco:medco_metadataType"/>
<xs:complexType name="medco_metadataType">
<xs:sequence>
<xs:element name="genomic_annotations_metadata" type="medco:genomic_annotations_metadataType"/>
<xs:element name="clinical_ontology_metadata" type="medco:clinical_ontology_metadataType"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="genomic_annotations_metadataType">
<xs:all>
<xs:element name="nice_name" type="xs:string"/>
<xs:element name="unique_name" type="xs:string"/>
<xs:element name="description" type="xs:string"/>
<xs:element name="attributes">
<xs:complexType>
<xs:sequence>
<xs:element name="attribute" type="medco:genomic_annotations_attributeType" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="identifying_attributes_unique_name">
<xs:complexType> <!-- add variant id structure / how to construct TODO -->
<xs:all>
<xs:element name="chromosome_nb" type="xs:string"/>
<xs:element name="start_position" type="xs:string"/>
<xs:element name="ref_allele" type="xs:string"/>
<xs:element name="alt_allele" type="xs:string"/>
</xs:all>
</xs:complexType>
</xs:element>
</xs:all>
</xs:complexType>
<xs:complexType name="genomic_annotations_attributeType">
<xs:all>
<xs:element name="nice_name" type="xs:string"/>
<xs:element name="unique_name" type="xs:string"/>
<xs:element name="origin" type="xs:string"/>
</xs:all>
<xs:attribute name="encrypted" type="xs:boolean" use="required"/>
<xs:attribute name="type" type="medco:data_typesType" use="required"/>
</xs:complexType>
<xs:simpleType name="data_typesType">
<xs:restriction base="xs:token">
<xs:enumeration value="STRING"/>
<xs:enumeration value="BOOL"/>
<xs:enumeration value="INT8"/>
<xs:enumeration value="INT16"/>
<xs:enumeration value="INT32"/>
<xs:enumeration value="INT64"/>
<xs:enumeration value="FLOAT32"/>
<xs:enumeration value="FLOAT64"/>
</xs:restriction>
</xs:simpleType>
<xs:complexType name="clinical_ontology_metadataType">
<xs:all>
<xs:element name="nice_name" type="xs:string"/>
<xs:element name="unique_name" type="xs:string"/>
<xs:element name="description" type="xs:string"/>
<xs:element name="project_path" type="xs:string"/><!-- XXX check if sth else is needed -->
</xs:all>
</xs:complexType>
</xs:schema>

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