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I2b2CellsTests.java
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Mon, Dec 2, 22:39

I2b2CellsTests.java
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package ch.epfl.lca1.medco.i2b2;
import ch.epfl.lca1.medco.i2b2.fr.I2B2FRCell;
import ch.epfl.lca1.medco.i2b2.ont.I2B2ONTCell;
import ch.epfl.lca1.medco.i2b2.pm.UserAuthentication;
import ch.epfl.lca1.medco.util.MedCoUtil;
import ch.epfl.lca1.medco.util.exceptions.UnlynxException;
import edu.harvard.i2b2.common.exception.I2B2Exception;
import edu.harvard.i2b2.common.util.jaxb.JAXBUtilException;
import org.junit.Test;
import javax.xml.datatype.DatatypeConfigurationException;
import static org.junit.Assert.*;
/**
* Created by misbach on 12.06.17.
*/
public class I2b2CellsTests {
static {
MedCoUtil.getTestInstance().setProperty(MedCoUtil.ONTCELL_WS_URL_PROPERTIES,
"http://localhost:8080/i2b2/services/OntologyService");
MedCoUtil.getTestInstance().setProperty(MedCoUtil.FRCELL_WS_URL_PROPERTIES,
"http://localhost:8080/i2b2/services/FRService");
}
private UserAuthentication auth = new UserAuthentication("i2b2demotest", "Demo",
"demo", false, 0, "demouser");
private I2B2ONTCell ontCell = new I2B2ONTCell(auth);
private I2B2FRCell frCell = new I2B2FRCell(auth);
@Test
public void ontAddConceptTest() throws I2B2Exception, JAXBUtilException, DatatypeConfigurationException {
ontCell.accumulateConcept("test1", "\\test1\\", "FA", "codetest", "suffix", "comment", "CUSTOM_META", null, null);
ontCell.accumulateConcept("test2", "\\test2\\", "FA", "codetest", "suffix2", "comment", "CUSTOM_META", null, null);
I2b2Status res = ontCell.loadConcepts();
System.out.println(res);
System.out.println(res.getStatusMessage());
assertEquals(res, I2b2Status.DONE);
}
@Test
public void ontIdTest() throws I2B2Exception, UnlynxException {
ontCell.updateNextEncUsableId(3);
ontCell.updateNextClearUsableId(40);
long idE = ontCell.getNextEncUsableId();
long idC = ontCell.getNextClearUsableId();
assertEquals(idE, 3);
assertEquals(idC, 40);
System.out.println(idE + " , " + idC);
ontCell.updateNextEncUsableId(idE + 1);
ontCell.updateNextClearUsableId(idC + 1);
}
@Test
public void frUploadTest() throws I2B2Exception {
try {
frCell.uploadFile("testfiles/medco_request_query_def_reference.xml", "testFile.xml");
} catch (Throwable t) {
t.printStackTrace();
fail(t.getMessage());
}
assertTrue(true);
}
}

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