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medco-i2b2-cell/src/test/ch/epfl/lca1/medco/loader/EncryptedIdsUnlynxTests.java
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EncryptedIdsUnlynxTests.java
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package ch.epfl.lca1.medco.loader;
import ch.epfl.lca1.medco.util.exceptions.UnlynxException;
import org.junit.Assert;
import org.junit.Test;
import java.math.BigInteger;
public class EncryptedIdsUnlynxTests {
@Test
public void PushBitsTest() {
long orig = 0b1110_1011;
Assert.assertEquals(
EncryptedIdentifiersManager.pushBitsFromRight(orig, 0, 0b101),
0b1110_1011
);
Assert.assertEquals(
EncryptedIdentifiersManager.pushBitsFromRight(orig, 1, 0b1111101),
0b1110_1011_1
);
Assert.assertEquals(
EncryptedIdentifiersManager.pushBitsFromRight(orig, 3, 0b101),
0b11101011101
);
Assert.assertEquals(
EncryptedIdentifiersManager.pushBitsFromRight(orig, 8, 0b101011110101011),
0b1110_1011_1010_1011
);
}
@Test
public void RegexTests() {
Assert.assertTrue(
"3".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertTrue(
"11".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertTrue(
"20".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertTrue(
"X".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertFalse(
"33".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertFalse(
"V".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertFalse(
"XX".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertFalse(
"0".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertFalse(
"M2".matches(EncryptedIdentifiersManager.CHROMOSOME_ID_REGEX)
);
Assert.assertTrue(
"ATGGG".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertTrue(
"-".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertTrue(
"GATGGG".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertFalse(
"ATGGGGGG".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertFalse(
"D".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertFalse(
"3".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertTrue(
"-".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
Assert.assertFalse(
"G-".matches(EncryptedIdentifiersManager.ALLELES_REGEX)
);
}
@Test
public void GetIDTests() {
try {
long id = EncryptedIdentifiersManager.getVariantId(
"3",
33366L,
"ATCC",
"-");
long check = new BigInteger(
"1" +
"00011" +
"0000000000001000001001010110" +
"100" +
"000111110000" +
"000" +
"000000000000", 2).longValue();
System.out.println(id);
Assert.assertEquals(id, check);
long id2 = EncryptedIdentifiersManager.getVariantId(
"M",
33366L,
"-",
"AAAAAA");
long check2 = new BigInteger(
"1" +
"11010" +
"0000000000001000001001010110" +
"000" +
"000000000000" +
"110" +
"000000000000", 2).longValue();
Assert.assertEquals(id2, check2);
} catch (UnlynxException e) {
Assert.fail(e.getMessage());
}
try {
EncryptedIdentifiersManager.getVariantId("3",
33366L,
"ATCCCCC",
"-");
Assert.fail();
} catch (UnlynxException e) {
e.printStackTrace();
Assert.assertTrue(true);
}
try {
EncryptedIdentifiersManager.getVariantId(
"XX",
33366L,
"ATCC",
"-");
Assert.fail();
} catch (UnlynxException e) {
e.printStackTrace();
Assert.assertTrue(true);
} try {
EncryptedIdentifiersManager.getVariantId(
"3",
33366L,
"XATCC",
"-");
Assert.fail();
} catch (UnlynxException e) {
e.printStackTrace();
Assert.assertTrue(true);
} try {
EncryptedIdentifiersManager.getVariantId(
"3",
-33366L,
"ATCC",
"-");
Assert.fail();
} catch (UnlynxException e) {
e.printStackTrace();
Assert.assertTrue(true);
}
}
@Test
public void GetSpecificID() {
try {
long id = EncryptedIdentifiersManager.getVariantId(
"11",
74985268L,
"G",
"A");
long check = new BigInteger(
"1" +
"00011" +
"0000000000001000001001010110" +
"100" +
"000111110000" +
"000" +
"000000000000", 2).longValue();
System.out.println(id);
Assert.assertEquals(id, check);
} catch (UnlynxException e) {
e.printStackTrace();
Assert.assertTrue(true);
}
}
}
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