metatran_LBE/20200819_quality_control_merge.sh
b4a73f19d755mapping_withrRNA

20200819_quality_control_merge.sh
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			conda activate multiqc_env

			export WORKING_DIR=/media/bioinfoteam/SCRATCH_850GB/temp_metatranscriptomic/merge
			cd $WORKING_DIR

			#Quality Control
			##quality check on all fies ending by .fastq.gz
			for filename in $(ls *'.fastq')

			do

			fastqc $filename
			done

			multiqc .