Homec4science
Diffusion MSM (boubat) Browse

msm/ShoulderModel_NoElbow/TOOLBOX_Subject_Specific/SUBJECT_TOOL_script_generator.m~
5af7c010655fboubat

Last Change
Raw File

SUBJECT_TOOL_script_generator.m~
View Options

function CBScript = SUBJECT_TOOL_script_generator(task)
%{
Uicontrol Callback Script Generator for Subject Specific Tool GUI.
--------------------------------------------------------------------------
Syntax :
CBScript = SUBJECT_TOOL_script_generator(task)
--------------------------------------------------------------------------
File Description :
This function generates the uicontrol callback scripts for the subject
specific tool GUI. The task input variable inidicates which script to return.
List of Scripts :
Task 1: Close Subject Tool
Task 2: Show PCSA From List
Task 3: Update Muscle PCSA
Task 4: Show Glenoid Orientation
Task 5: Update Glenoid Orientation
Task 6: Load Measured Kinematics
Task 7: Update Subject Weight
Task 8: Update Ellipsoid
Task 9: VISUALIZATION
Task 10: SCALING OVERWRITE
Task 11: RESET TO GENERIC MODEL
Task 12: Help
--------------------------------------------------------------------------
%}
% Initialise the output
CBScript = [];
%--------------------------------------------------------------------------
% Task 1 : Close the Subject GUI
% Closes the subject specific tool GUI and deletes the variables that are no
% longer needed.
%--------------------------------------------------------------------------
if isequal(task, 'Close Subject Tool')
CBScript = [...
'clear SHandle;',...
'clear SPlotHandles;',...
'close gcf;'];
%--------------------------------------------------------------------------
% Task 2 : Show the PCSA data of each muscle selected from the popup menu
%--------------------------------------------------------------------------
elseif isequal(task, 'Show PCSA From List')
CBScript = 'SUBJECT_TOOL_Show_PCSA(SGUIHandle, MWDATA);';
%--------------------------------------------------------------------------
% Task 3 : Update the PCSA and FMAX of each selected muscle based on the
% value specified by the user
%--------------------------------------------------------------------------
elseif isequal(task, 'Update Muscle PCSA')
CBScript = 'MWDATA = SUBJECT_TOOL_Update_PCSA(SGUIHandle, MWDATA);';
%--------------------------------------------------------------------------
% Task 4 : Show glenoid orientation data in terms of glenoid version,
% inclination, or glenoid fossa center in the scapula coordinate system.
% Note: the scapula coordinate system here is different than the one used
% for kinematic and dynamic model of the shoulder. It's adapted from A. Terrier
% , et al, Bone Joint J 2014;96-B:513?18 in order to be consistent with the
% patient specific data.
%--------------------------------------------------------------------------
elseif isequal(task, 'Show Glenoid Orientation')
CBScript = 'SUBJECT_TOOL_Show_Glenoid_Orientation(SGUIHandle, BLDATA);';
%--------------------------------------------------------------------------
% Task 5 : Update the glenoid inclination values. These are just saved
% here. Their effects on model will be accounted for in the Task 7
%--------------------------------------------------------------------------
elseif isequal(task, 'Update Glenoid Orientation')
CBScript = 'BLDATA = SUBJECT_TOOL_Update_Glenoid_Orientation(SGUIHandle, BLDATA);';
%--------------------------------------------------------------------------
% Task 6 : Load Measured Kinematics
%--------------------------------------------------------------------------
elseif isequal(task, 'Load Measured Kinematics')
CBScript = 'SSDATA = SUBJECT_TOOL_Load_Kinematics(SGUIHandle);';
%--------------------------------------------------------------------------
% Task 7 : Update the inertial parameters and bony landmarks and also the
% muscle architecture parameters as well as musculotendon parameters
%--------------------------------------------------------------------------
elseif isequal(task, 'Update Subject Weight')
CBScript = ['[DYDATA, MWDATA] = SUBJECT_TOOL_Update_Weight(SGUIHandle, DYDATA, MWDATA);'...
'BLDATA = SUBJECT_TOOL_build_data_bony_landmark(BLDATA, DYDATA);'...
'MWDATA = SUBJECT_TOOL_build_data_muscle_wrapping(BLDATA,MWDATA,DYDATA);'...
'disp(''The model skeletal morphology and muscle architecture and propertis were scaled'');'];
%--------------------------------------------------------------------------
% Task 8 : Update ricage ellipsoid and also the glenoid cone and also
% rederive the equations of motion of the model (dynamic model)
%--------------------------------------------------------------------------
elseif isequal(task, 'Update Ellipsoid')
CBScript = ['REDATA = SUBJECT_TOOL_build_data_ribcage_ellipsoid(BLDATA, DYDATA);'...
'DYDATA = SUBJECT_TOOL_build_data_dynamics(REDATA, BLDATA, DYDATA);'...
'disp(''Ribcage ellipsoides and dynamic model were scaled...'');'];
%--------------------------------------------------------------------------
% Task 9 : Visualaize the scaled model
%--------------------------------------------------------------------------
elseif isequal(task, 'VISUALIZATION')
CBScript = 'SPlotHandles = SUBJECT_TOOL_Visualization(SHandle, SPlotHandles, BLDATA, DYDATA, REDATA);';
%--------------------------------------------------------------------------
% Task 10 : SCALING OVERWRITE for the moment does not work but the idea is
% to overwrite the scaling performed based on the subject's weight and
% height by the scalings from imported measured kinematics.
%--------------------------------------------------------------------------
elseif isequal(task, 'SCALING OVERWRITE')
%CBScript = 'SUBJECT_TOOL_Overwirte_Scaling(SGUIHandle);';
%--------------------------------------------------------------------------
% Task 11 : Reset to generic model
%--------------------------------------------------------------------------
elseif isequal(task, 'RESET TO GENERIC MODEL')
CBScript = ['set(SGUIHandle.Gender_Selection.Gender,''Value'', 1);',...
'set(SGUIHandle.Weight_Selection.Weight,''string'', ''85.5'');',...
'set(SGUIHandle.Height_Selection.Height,''string'', ''1.86'');',...
'BLDATA = MAIN_INITIALISATION_build_data_bony_landmark();',...
'MWDATA = MAIN_INITIALISATION_build_data_muscle_wrapping(BLDATA);',...
'set(SGUIHandle.PCSA_Selection.MuscleName,''Value'', 1);',...
'set(SGUIHandle.Glenoid_Orientations.Popupmenu,''Value'', 1);',...
'SUBJECT_TOOL_Show_PCSA(SGUIHandle, MWDATA);',...
'SUBJECT_TOOL_Clear_WireFrame(SPlotHandles);',...
'SUBJECT_TOOL_Show_Glenoid_Orientation(SGUIHandle, BLDATA);',...
'REDATA = MAIN_INITIALISATION_build_data_ribcage_ellipsoid(BLDATA);',...
'DYDATA = MAIN_INITIALISATION_build_data_dynamics(REDATA, BLDATA);'];
%--------------------------------------------------------------------------
% Task 12 : SCALE the generic measured kinematics
%--------------------------------------------------------------------------
elseif isequal(task, 'SCALE KINEMATICS')
CBScript = 'SSDATA = SUBJECT_TOOL_Scale_Measurements(SGUIHandle, SSDATA);'...
'disp(''The model skeletal morphology and muscle architecture and propertis were scaled'');'];
%--------------------------------------------------------------------------
% Task 12 : Help
% Displays a help message in the command window when the help menu option
% is clicked.
%--------------------------------------------------------------------------
elseif isequal(task, 'Help')
CBScript = [...
'sprintf([''------------- INTERFACE FOR SUBJECT SPECIFIC TOOLBOX -----------------\n'',',...
' ''This GUI helps you adapt the generic model to a specific subject.\n'',',...
' ''You can do certain things that I am going explain later.\n'',',...
' ''details 1: PCSA\n'',',...
' ''details 2: glenoid orientation, what each angle means?\n'', ',...
' ''details 3: the kinematic data and the characteristics of the uploaded file\n'',',...
' ''\n'',',...
' ''\n'','...
' '''']);',...
'disp(ans);'];
%--------------------------------------------------------------------------
% Throw an error if task is not valid
%--------------------------------------------------------------------------
else
% Throw an error. No valid task was given
ErrorMsg = [...
'The user supplied task is not valid.',...
'SUBJECT_SPECIFIC_TOOL_script_generator requires a valid task as input.\n',...
'Try the Following : \n',...
'1) Close the Tool,\n',...
'2) ,\n',...
'3) ,\n',...
'4) ,\n',...
'5) ,\n',...
'6) ,\n',...
'7) .'];
error('ScptGen:ErrorMsg', ErrorMsg);
end
return;
c4science · Help