cmake_minimum_required(VERSION 3.0.0)

# project name and it is C++ only
project(scATACseq CXX)


# libraries
## boost library
set(BOOST_INCLUDEDIR "/usr/local/include/boost/")
set(BOOST_LIBRARYDIR "/usr/local/lib/boost")
find_package(Boost 1.65 COMPONENTS program_options REQUIRED)

## UnitTest++ library
## TODO write a FindUnitTest++.cmake file to use find_package()
find_library(UNITTEST_LIB
             NAMES "UnitTest++"
             PATHS "/usr/local/lib/UnitTest++")
find_path(UNITTEST_INCLUDE
          NAMES "UnitTest++.h"
          PATHS "/usr/local/include/UnitTest++/")
include_directories(${UNITTEST_INCLUDE})
# link_directories(${UNITTEST_LIB})

## zlib (for seqan Bam I/O)
find_package(ZLIB REQUIRED)

## SeqAn
find_package (SeqAn REQUIRED)

## threads
find_package(Threads REQUIRED)

add_subdirectory(src)