results_dir='results/bulk_sequencing'
data_dir='data/bulk_sequencing/'

mkdir -p $results_dir

file_mnase=$data_dir'/ctcf_mnase_k562.mat'
file_seed=$results_dir'/ctcf_mnase_k562_seed.txt'
n_iter='20'
n_shift='21'
n_core=6

for k in 1 2 3 4 5 6 7 8 9 10
do
	seed=$(< /dev/urandom tr -dc _A-Z-a-z-0-9 | head -c${1:-15};echo)
	file_prob=$results_dir/'ctcf_mnase_k562_'$k'class_prob.mat4d'
	file_ref=$results_dir/'ctcf_mnase_k562_'$k'class_ref.mat'
	file_aic=$results_dir/'ctcf_mnase_k562_'$k'class_aic.txt'
	echo "$file_prob $seed" >> $file_seed
	bin/EMRead      --read $file_mnase --class $k --shift $n_shift --flip --iter $n_iter --seed $seed --thread $n_core > $file_prob
	bin/ProbToModel --read $file_mnase --prob $file_prob --thread $n_core 1> $file_ref 2> $file_aic
done