Diffusion scATAC-seq (master) History

scATAC-seq/scripts
masterb3279a0472da7fbb2b72694…

Sep 25 2019

Added code to compute kmer enrichment
b3279a0472da
·rgroux on Sep 25 2019, 17:20.

Sep 19 2019

Bug in EMSequence apparently corrected. Now there is only a check for small…
cb31ac5cd561
·rgroux on Sep 19 2019, 18:20.
save There is a bug in EMSequence Save before starting to dissect the code
27fbded05120
·rgroux on Sep 19 2019, 08:35.

Sep 2 2019

save
9307741499a8
·rgroux on Sep 2 2019, 09:06.

Aug 29 2019

save
782b030be48e
·rgroux on Aug 29 2019, 10:28.

Aug 23 2019

save
7b3b7bc40180
·rgroux on Aug 23 2019, 10:22.

Aug 20 2019

Move constructors and assignment operators added to Matrix, DataLayer, EM and…
1f2a156d69fc
·rgroux on Aug 20 2019, 10:09.

Aug 19 2019

Major update: EM for sequence now support background class Important code…
1bfc0a93ba65
·rgroux on Aug 19 2019, 14:48.

Jul 25 2019

Sequence layer fully supported Sequence matrices construction and EM motif…
c65a488e1038
·rgroux on Jul 25 2019, 09:17.

Jul 11 2019

save
d777fdf7e152
·rgroux on Jul 11 2019, 11:05.
Work in progress to have a multi-layer EM classification
fcead3d81371
·rgroux on Jul 11 2019, 10:42.

Jul 3 2019

1)ATAC-seq data subsets created for open chromatin and nucleosomes. 2)Code to…
faf6f1d50a68
·rgroux on Jul 3 2019, 16:17.

May 3 2019

AIC computation added to ChIPPartitioning impl
5ff7043d02d8
·rgroux on May 3 2019, 15:19.

Apr 30 2019

ChIPPartitioning algorithm implemented and fully working.
5a106c74da4f
·rgroux on Apr 30 2019, 13:10.