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cryosparcm.sh
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Sat, Apr 20, 08:50

cryosparcm.sh
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#!/usr/bin/env bash
set -euo pipefail
install_path="$HOME"/cryosparc
# Usage
usage () {
echo "$0 -p <install_path> -P <base_port> command"
echo "Usage:"
echo " command : command to pass to cryosparcm (start|stop)"
echo " -p install path : prefix for installation [${install_path}] "
echo " -P base_port : base port [39000] "
echo " -v : be verbose"
echo " -h : print this notice"
echo ""
}
set +u
if [ "x$1" = "x" ]; then
usage
exit 1
fi
set -u
# Parse options
while getopts ":P:p:h" opt; do
case $opt in
p)
install_path="${OPTARG}"
;;
P)
cryosparcm_port="${OPTARG}"
;;
h)
usage
OPTIND=1
exit 0
;;
\?)
echo "Invalid option: -$OPTARG" >&2
usage
OPTIND=1
exit 1
;;
:)
echo "Option -$OPTARG requires an argument." >&2
usage
OPTIND=1
exit 1
;;
esac
done
shift $((OPTIND-1))
OPTIND=1
command=$1
shift
module load gcc cuda python
export PATH=${install_path}/cryosparc_master/bin:$PATH
cryosparcm_path="$(which cryosparcm 2> /dev/null)"
base_dir=$(dirname "$(dirname "${cryosparcm_path}")")
master_host=$(hostname)
if [ $master_host = "izar3" ]; then
master_host=$master_host.hpc.epfl.ch
else
master_host=$master_host.epfl.ch
fi
cp $base_dir/config.sh $base_dir/config.sh.bak
sed -i -e 's/export CRYOSPARC_MASTER_HOSTNAME.*$/export CRYOSPARC_MASTER_HOSTNAME=\"'"$master_host"'\"/g' $base_dir/config.sh
sed -i -e 's/export CRYOSPARC_HOSTNAME_CHECK.*$/export CRYOSPARC_HOSTNAME_CHECK=\"'"$master_host"'\"/g' $base_dir/config.sh
set +u
if [ "x${cryosparcm_port}" != "x" ]; then
sed -i -e 's/export CRYOSPARC_BASE_PORT.*$/export CRYOSPARC_BASE_PORT='$cryosparcm_port'/g' $base_dir/config.sh
fi
set -u
source $base_dir/config.sh
${cryosparcm_path} $command $* | sed -e 's/'$(hostname --fqdn)'/'${master_host}'/'
if [[ $command =~ '.*start' ]]; then
${cryosparcm_path} status
fi

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