i2b2-merge-to…

intermediate-mappings-generator
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			#!/bin/bash

			CONFIG_HOME=`dirname $0`

			CONFIG_FILE_DIR=${CONFIG_HOME}/conf

			mkdir -p ${CONFIG_FILE_DIR}

			CONFIG_CLASSPATH=.:CONFIG_FILE_DIR

			LIB_DIR=${CONFIG_HOME}/lib

			#
			#Set up our classpath with our library dependencies...
			for jar in `find ${LIB_DIR}/*.jar`;
			do
			CONFIG_CLASSPATH=${jar}:${CONFIG_CLASSPATH}
			done

			#
			#Guess JAVA_HOME if it's not set
			if [ ${#JAVA_HOME} == 0 ]; then
			JAVA_HOME=/usr/local/java
			fi

			JVM_ARGS="-Xmx256m"

			JAVA_COMMAND="java ${JVM_ARGS} -Dlog4j.configuration=${CONFIG_FILE_DIR}/log4j.properties -cp ${CONFIG_CLASSPATH}:${CONFIG_FILE_DIR} net.shrine.utilities.mapping.generation.IntermediateTermGenerator $@"

			${JAVA_COMMAND}