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install-steward-only.sh
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Mon, Jul 22, 23:26

install-steward-only.sh
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#!/bin/bash
#########
# SHRINE Data Steward Installation - Standlone
#
# A script intended for users with an existing SHRINE installation (1.18.x or
# lower) who simply want to get the SHRINE Data Steward component installed.
#
# - Creates the stewardDB database with the appropriate schema
# - Downloads steward.war and places it in webapps/
# - Templates out steward.conf and steward.xml
#
# @see upgrade_tomcat.sh = ensure Tomcat 7 is installed first!
# @see skel/steward.conf = steward application config
# @see skel/steward.xml = steward Tomcat context definition
#
#########
echo "[shrine/install-steward-only.sh] Begin."
source ./shrine.rc
require "${SHRINE_STEWARD_MYSQL_USER}" "SHRINE_STEWARD_MYSQL_USER must be set"
require "${SHRINE_STEWARD_MYSQL_PASSWORD}" "SHRINE_STEWARD_MYSQL_PASSWORD must be set"
require "${SHRINE_STEWARD_MYSQL_HOST}" "SHRINE_STEWARD_MYSQL_HOST must be set"
require "${SHRINE_STEWARD_DB_NAME}" "SHRINE_STEWARD_DB_NAME must be set"
require "${KEYSTORE_FILE}" "KEYSTORE_FILE must be set"
require "${KEYSTORE_PASSWORD}" "KEYSTORE_PASSWORD must be set"
#####
echo "[shrine/install-steward-only.sh] Creating MySQL database $SHRINE_STEWARD_DB_NAME"
mkdir -p work; cd work
interpolate_file ../steward-only.sql "SHRINE_STEWARD_DB_NAME" "$SHRINE_STEWARD_DB_NAME" | \
interpolate "SHRINE_STEWARD_MYSQL_USER" "$SHRINE_STEWARD_MYSQL_USER" | \
interpolate "SHRINE_STEWARD_MYSQL_PASSWORD" "$SHRINE_STEWARD_MYSQL_PASSWORD" | \
interpolate "SHRINE_STEWARD_MYSQL_HOST" "$SHRINE_STEWARD_MYSQL_HOST" > steward-only.sql.interpolated
mysql -u root < steward-only.sql.interpolated
echo "[shrine/install-steward-only.sh] Creating tables for $SHRINE_STEWARD_DB_NAME"
wget ${SHRINE_SVN_URL_BASE}/code/steward/src/main/sql/mysql.ddl
mysql -u $SHRINE_STEWARD_MYSQL_USER -p$SHRINE_STEWARD_MYSQL_PASSWORD -D $SHRINE_STEWARD_DB_NAME < mysql.ddl
#####
echo "[shrine/install-steward-only.sh] Downloading steward.war"
NEXUS_URL_BASE=http://repo.open.med.harvard.edu/nexus/content/groups/public/net/shrine/
SHRINE_STEWARD_ARTIFACT_ID=steward
SHRINE_STEWARD_WAR_FILE=${SHRINE_STEWARD_ARTIFACT_ID}-${SHRINE_VERSION}.war
SHRINE_STEWARD_WAR_FILE_FINAL_NAME=steward.war
SHRINE_STEWARD_WAR_URL=${NEXUS_URL_BASE}/${SHRINE_STEWARD_ARTIFACT_ID}/${SHRINE_VERSION}/${SHRINE_STEWARD_WAR_FILE}
wget --no-clobber ${SHRINE_STEWARD_WAR_URL}
cp ${SHRINE_STEWARD_WAR_FILE} $SHRINE_TOMCAT_HOME/webapps/${SHRINE_STEWARD_WAR_FILE_FINAL_NAME}
cd ..
#####
echo "[shrine/install-steward-only.sh] Configuring steward.conf"
interpolate_file ./skel/steward.conf "SHRINE_ADAPTER_I2B2_DOMAIN" "$SHRINE_ADAPTER_I2B2_DOMAIN" | \
interpolate "SHRINE_STEWARD_DB_NAME" "$SHRINE_STEWARD_DB_NAME" | \
interpolate "I2B2_PM_IP" "$I2B2_PM_IP" | \
interpolate "KEYSTORE_FILE" "$KEYSTORE_FILE" | \
interpolate "KEYSTORE_PASSWORD" "$KEYSTORE_PASSWORD" | \
interpolate "KEYSTORE_ALIAS" "$KEYSTORE_ALIAS" > $SHRINE_STEWARD_CONF_FILE
#####
echo "[shrine/install-steward-only.sh] Configuring steward.xml"
interpolate_file ./skel/steward.xml "SHRINE_STEWARD_MYSQL_USER" "$SHRINE_STEWARD_MYSQL_USER" | \
interpolate "SHRINE_STEWARD_MYSQL_PASSWORD" "$SHRINE_STEWARD_MYSQL_PASSWORD" | \
interpolate "SHRINE_STEWARD_MYSQL_HOST" "$SHRINE_STEWARD_MYSQL_HOST" | \
interpolate "SHRINE_STEWARD_DB_NAME" "$SHRINE_STEWARD_DB_NAME" > $SHRINE_TOMCAT_STEWARD_CONF

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