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shrine-medco/commons/protocol-query/src/test/scala/net/shrine/protocol/query/PanelTest.scala
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PanelTest.scala
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package net.shrine.protocol.query
import org.scalatest.junit.AssertionsForJUnit
import scala.xml.NodeSeq
import net.shrine.util.XmlUtil
import net.shrine.util.XmlDateHelper
import net.shrine.util.ShouldMatchersForJUnit
import org.junit.Test
/**
* @author clint
* @date ~ Jan 24, 2012
*/
final class PanelTest extends ShouldMatchersForJUnit {
private val t1 = Term("foo")
private val term1 = Term("\\\\SHRINE\\SHRINE\\Diagnoses\\Congenital anomalies\\Cardiac and circulatory congenital anomalies\\Aortic valve stenosis\\Congenital stenosis of aortic valve\\")
private val term2 = Term("\\\\SHRINE\\SHRINE\\Demographics\\Language\\Bosnian\\")
private val term3 = Term("\\\\SHRINE\\SHRINE\\Demographics\\Age\\18-34 years old\\30 years old\\")
private val query1 = Query("12345")
private val modifiers = Modifiers("foo", "bar", "baz")
private val valueConstraint = ValueConstraint("foo", Some("bar"), "baz", "nuh")
private val p1 = Panel(1, true, 1, None, None, PanelTiming.Any, Nil, Seq(Constrained(t1, modifiers, valueConstraint)))
private val p2 = Panel(1, false, 1, None, None, PanelTiming.Any, Seq(t1))
private def now = QueryDefinition.truncateDate(XmlDateHelper.now)
private val startDate = Some(now)
private val endDate = Some(now)
private val p3 = Panel(3, true, 99, startDate, endDate, PanelTiming.Any, Seq(term1, term2, term3))
private val p4 = Panel(4, false, 0, startDate, endDate, PanelTiming.Any, Seq(term1, term2, term3))
private val p5 = Panel(1, false, 1, None, None, PanelTiming.Any, Seq(term1, query1))
private val p6 = Panel(1, true, 1, None, None, PanelTiming.Any, Seq(term2), Seq(Constrained(t1, Option(modifiers), None)))
private val p7 = Panel(1, true, 1, None, None, PanelTiming.Any, Seq(query1), Seq(Constrained(t1, None, Option(valueConstraint))))
@Test
def testToExpression {
Panel(1, false, 0, None, None, PanelTiming.Any, Seq(t1)).toExpression should equal(t1)
p1.toExpression should equal(Not(Constrained(t1, modifiers, valueConstraint)))
p2.toExpression should equal (t1)
p3.toExpression should equal(OccuranceLimited(99, DateBounded(startDate, endDate, Not(Or(term1, term2, term3)))))
p4.toExpression should equal(DateBounded(startDate, endDate, Or(term1, term2, term3)))
val withNonDefaultTiming = p2.copy(timing = PanelTiming.SameVisit)
withNonDefaultTiming.toExpression should equal(WithTiming(PanelTiming.SameVisit, t1))
}
@Test
def testFromI2b2 {
def roundTrip(panel: Panel) {
val i2b2Xml = panel.toI2b2
val unmarshalled = Panel.fromI2b2(i2b2Xml).get
(panel eq unmarshalled) should equal(false)
unmarshalled should equal(panel)
}
roundTrip(p1)
roundTrip(p2)
roundTrip(p3)
roundTrip(p4)
roundTrip(p5)
roundTrip(p6.copy(timing = PanelTiming.SameVisit))
roundTrip(p7.copy(timing = PanelTiming.SameInstanceNum))
}
@Test
def testPanelGuards {
intercept[IllegalArgumentException] {
Panel(1, true, 1, None, None, PanelTiming.Any, Nil)
}
Panel(1, true, 1, None, None, PanelTiming.Any, Seq(t1))
}
@Test
def testInvert {
p1.invert.inverted should be(false)
p2.invert.inverted should be(true)
p1.invert.invert should equal(p1)
}
@Test
def testWithStart {
val time = XmlDateHelper.now
val withStart = p1.withStart(Some(time))
withStart should not be (p1)
withStart.start should equal(Some(time))
withStart.end should equal(p1.end)
withStart.number should equal(p1.number)
withStart.inverted should equal(p1.inverted)
withStart.minOccurrences should equal(p1.minOccurrences)
withStart.terms should equal(p1.terms)
}
@Test
def testWithEnd {
val time = XmlDateHelper.now
val withEnd = p1.withEnd(Some(time))
withEnd should not be (p1)
withEnd.start should equal(p1.start)
withEnd.end should equal(Some(time))
withEnd.number should equal(p1.number)
withEnd.inverted should equal(p1.inverted)
withEnd.minOccurrences should equal(p1.minOccurrences)
withEnd.terms should equal(p1.terms)
}
@Test
def testWithMinOccurrences {
val min = 99
val withMin = p1.withMinOccurrences(min)
withMin should not be (p1)
withMin.minOccurrences should equal(min)
withMin.start should equal(p1.start)
withMin.end should equal(p1.end)
withMin.number should equal(p1.number)
withMin.inverted should equal(p1.inverted)
withMin.terms should equal(p1.terms)
}
@Test
def testToI2B2 {
val p1I2b2Xml = p1.toI2b2
p1I2b2Xml.head.label should equal("panel")
//panel_number
(p1I2b2Xml \ "panel_number").text should be("1")
(p1.copy(number = 99).toI2b2 \ "panel_number").text should be("99")
//panel date defaults
(p1I2b2Xml \ "panel_start") should equal(NodeSeq.Empty)
(p1I2b2Xml \ "panel_end") should equal(NodeSeq.Empty)
//item date defaults
(p1I2b2Xml \ "item" \ "constrain_by_date").toString should equal(XmlUtil.stripWhitespace(<constrain_by_date></constrain_by_date>).toString)
(p1I2b2Xml \ "item" \ "constrain_by_date" \ "date_from") should equal(NodeSeq.Empty)
(p1I2b2Xml \ "item" \ "constrain_by_date" \ "date_to") should equal(NodeSeq.Empty)
//Query-in-query
{
val referencesQuery = p5.toI2b2
(referencesQuery \ "item").map(i => (i \ "item_key").text) should equal(Seq(term1.value, query1.value))
}
//dates
{
val time = XmlDateHelper.now
val withStart = p1.withStart(Some(time)).toI2b2
(withStart \ "panel_date_from").text should equal(time.toString)
(withStart \ "item" \ "constrain_by_date" \ "date_from").text should equal(time.toString)
(withStart \ "panel_date_to") should equal(NodeSeq.Empty)
(withStart \ "item" \ "constrain_by_date" \ "date_to") should equal(NodeSeq.Empty)
val withEnd = p1.withEnd(Some(time)).toI2b2
(withEnd \ "panel_date_from") should equal(NodeSeq.Empty)
(withEnd \ "item" \ "constrain_by_date" \ "date_from") should equal(NodeSeq.Empty)
(withEnd \ "panel_date_to").text should equal(time.toString)
(withEnd \ "item" \ "constrain_by_date" \ "date_to").text should equal(time.toString)
val withStartAndEnd = p1.withStart(Some(time)).withEnd(Some(time)).toI2b2
(withStartAndEnd \ "panel_date_from").text should equal(time.toString)
(withStartAndEnd \ "panel_date_to").text should equal(time.toString)
(withStartAndEnd \ "item" \ "constrain_by_date" \ "date_from").text should equal(time.toString)
(withStartAndEnd \ "item" \ "constrain_by_date" \ "date_to").text should equal(time.toString)
}
//invert
(p1I2b2Xml \ "invert").text should equal("1")
(p1.invert.toI2b2 \ "invert").text should equal("0")
//panel_timing
(p1I2b2Xml \ "panel_timing").text should equal(PanelTiming.Any.name)
//total_item_occurrences
(p1I2b2Xml \ "total_item_occurrences").text should equal("1")
(p1.withMinOccurrences(99).toI2b2 \ "total_item_occurrences").text should equal("99")
//item defaults
(p1I2b2Xml \ "item" \ "class").text should equal("ENC")
(p1I2b2Xml \ "item" \ "item_icon").text should equal("LA")
(p1I2b2Xml \ "item" \ "item_is_synonym").text should equal("false")
//item/hlevel
(p1I2b2Xml \ "item" \ "hlevel").text should equal("0")
val i2b2Xml = p1.withTerms(Seq(term1)).toI2b2
val xml = (p1.withTerms(Seq(term1)).toI2b2 \ "item" \ "hlevel")
(p1.withOnlyTerms(Seq(term1)).toI2b2 \ "item" \ "hlevel").text should equal("5")
(p1.withOnlyTerms(Seq(term2)).toI2b2 \ "item" \ "hlevel").text should equal("3")
(p1.withOnlyTerms(Seq(term3)).toI2b2 \ "item" \ "hlevel").text should equal("4")
// item/item_name
(p1I2b2Xml \ "item" \ "item_name").text should equal(t1.value)
(p1.withOnlyTerms(Seq(term1)).toI2b2 \ "item" \ "item_name").text should equal(term1.value)
// item/item_key
(p1I2b2Xml \ "item" \ "item_key").text should equal(t1.value)
(p1.withOnlyTerms(Seq(term1)).toI2b2 \ "item" \ "item_key").text should equal(term1.value)
// item/tooltip
(p1I2b2Xml \ "item" \ "tooltip").text should equal(t1.value)
(p1.withOnlyTerms(Seq(term1)).toI2b2 \ "item" \ "tooltip").text should equal(term1.value)
//multiple items
val with2Items = p1.withTerms(Seq(term2)).withConstrainedTerms(Seq(Constrained(term1, modifiers, valueConstraint))).toI2b2
(with2Items \\ "item").size should equal(2)
val Seq(item1, item2) = (with2Items \\ "item").sortBy(xml => (xml \ "item_name").text).reverse
(item1 \ "item_name").text should equal(term1.value)
(item1 \ "item_key").text should equal(term1.value)
(item1 \ "tooltip").text should equal(term1.value)
(item2 \ "item_name").text should equal(term2.value)
(item2 \ "item_key").text should equal(term2.value)
(item2 \ "tooltip").text should equal(term2.value)
//modifiers
Modifiers.fromI2b2(item1 \ "constrain_by_modifier").get should equal(modifiers)
Modifiers.fromI2b2(item2 \ "constrain_by_modifier").isFailure should be(true)
//valueConstraints
ValueConstraint.fromI2b2(item1 \ "constrain_by_value").get should equal(valueConstraint)
ValueConstraint.fromI2b2(item2 \ "constrain_by_value").isFailure should be(true)
}
}
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