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clean.sh
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Created
Wed, Oct 16, 18:34
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935 B
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text/x-shellscript
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Fri, Oct 18, 18:34 (2 d)
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blob
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21711181
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R2664 SHRINE MedCo Fork
clean.sh
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#!/bin/bash
#########
# Restoring i2b2 to pre SHRINE installation state
#
#########
source ./i2b2.rc
#########
echo "[i2b2/clean.sh] Begin."
echo "[i2b2/clean.sh] HIVE: If exists, restore Backup copy of HIVE Ontology Datasource (file:ont-ds.xml)"
cp backup/ont-ds.xml ${JBOSS_DEPLOY_DIR}/ont-ds.xml
sudo -u postgres psql ${I2B2_DB_HIVE_USER} < clean_hive.sql
echo "[i2b2/clean.sh] PM: Restoring PM Config, removing SHRINE project"
interpolate_file clean_pm.sql "SHRINE_USER" "${SHRINE_USER}" > clean_pm.sql.interpolated
sudo -u postgres psql ${I2B2_DB_PM_USER} < clean_pm.sql.interpolated
echo "[i2b2/clean.sh] ONT: Removing Ontology User and Data"
interpolate_file clean_ontology.sql "I2B2_DB_SHRINE_ONT_USER" "${I2B2_DB_SHRINE_ONT_USER}" > clean_ontology.sql.interpolated
sudo -u postgres psql ${I2B2_DB_ONT_USER} < clean_ontology.sql.interpolated
find -name *.interpolated | xargs rm
echo "[i2b2/clean.sh] Done."
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