Page MenuHomec4science
Files F74916419

Toc252797232.htm
No OneTemporary
Actions

File Metadata

Created
Tue, Jul 30, 09:20

Toc252797232.htm
View Options

<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<html xml:lang="en" xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8">
<link rel="stylesheet" type="text/css" href="../shrinestyle.css" />
<title>SHRINE Data Reference Guide</title>
<style>
#guide {font-family:"Arial", Arial, sans-serif;
font-size:120%;
text-align:center;
padding-top:15px;
padding-bottom:15px;
color:white;
}
#footer {font-family:"Arial", Arial, sans-serif;
text-align:center;
padding-top:1px;
padding-bottom:1px;
background-color:#D9ECF0;
</style>
</head>
<body>
<div>
<div id="guide">
SHRINE Data Reference Guide
</div>
<table border="0" bgcolor="white" cellpadding="3" width="100%">
<tr>
<td valign="top" width="25%" bgcolor="#D9ECF0">
<!-- Navigation -->
<p>
<a href="index.htm">Contents</a>
</p>
<p>
<a href="Toc252797232.htm"><strong><em>Basics</em></strong></a>
</p>
<ul><li>
<a href="Toc252797232.htm"><strong><em>Terminology</em></strong></a>
</li>
<li>
<a href="Toc252797233.htm">Availability and Maintenance</a>
</li></ul>
<p>
<a href="Toc252797235.htm">Standards</a>
</p>
<ul><li>
<a href="Toc252797235.htm">Core Standards</a>
</li>
<li>
<a href="Toc252797236.htm">Demographic Standards</a>
</li>
<li>
<a href="Toc252797237.htm">Diagnoses Standards</a>
</li>
<li>
<a href="Toc252797238.htm">Medications Standards</a>
<ul><li>
<a href="Toc252797239.htm">Site to RxNorm Associations Type Mapping</a>
</li>
<li>
<a href="Toc252797240.htm">Site to NDR-RT Mapping</a>
</li></ul>
</li>
<li>
<a href="Toc252797241.htm">Labs Standards</a>
</li></ul>
<p>
<a href="Toc252797243.htm">Local Data</a>
</p>
<ul><li>
<a href="Toc252797243.htm">Semantics Preservation</a>
</li>
<li>
<a href="LocalDiags.htm">Local Diagnoses Data</a>
<ul>
<li><a href="PartnersDiagSemantics.html">BWH and MGH Diagnoses</a></li>
</ul>
</li>
<li>
<a href="Toc252797244.htm">Local Medications Data</a>
<ul><li><a href="BidmcMedSemantics.html">BIDMC Medications</a></li>
<li><a href="PartnersMedSemantics.html">BWH and MGH Medications</a></li>
<li><a href="ChbMedSemantics.html">CHB Medications</a></li></ul>
</li></ul>
<p>
&#91; <a href="../index.htm">SHRINE Help Main Menu</a> &#93;
</p>
</td>
<td valign="top">
<!-- Content -->
<h1>
<a name="_Toc252797232">Basics</a>
</h1>
<p>
SHRINE currently makes patient demographics, diagnoses, medications, and a sample of laboratory results data available to be searched. SHRINE Core
ontology is a collection of terms that describe these data and can be used to construct queries. The terms are arranged into a hierarchy for easy
navigation; the ontology can be searched for a particular terms as well.
</p>
<p>
A standard terminology was selected where possible to represent each type of data accessible through use of the system. A terminology was modified as
necessary to fit the requirements of SHRINE.
</p>
<h2>
<a name="_Toc252797232">Terminology</a>
</h2>
<p>
The following standard terminology provides the baseline for the Core ontology:
</p>
<ul><li>
Demographics &#8211; Patient demographic data available at each participating SHRINE hospital include:
<ul>
<li>
Age
</li>
<li>
Gender &#8211; Health Level Seven International (HL7) <a href="http://www.hl7.org/v3ballot/html/infrastructure/vocabulary/AdministrativeGender.htm" title="HL7 Administrative Gender" target="_blank">Administrative Gender</a>
</li>
<li>
Language &#8211; International Organization for Standardization (ISO) <a href="http://www.iso.org/iso/catalogue_detail?csnumber=22109" title="ISO 639-1" target="_blank">ISO 639-1</a>
</li>
<li>
Marital status &#8211; HL7 <a href="http://www.hl7.org/v3ballot/html/infrastructure/vocabulary/MaritalStatus.htm" title="HL7 Marital Status" target="_blank">Marital Status</a>
</li>
<li>
Race and Ethnicity &#8211; Centers for Disease Control and Prevention (CDC) <a href="http://www.cdc.gov/nedss/DataModels/index.html" title="CDC Race and Ethnicity" target="_blank">Race and Ethnicity Code Sets</a>
</li></ul></li>
<li>
Diagnoses &#8211; Diagnoses are identified by National Center for Health Statistics (NCHS) <a href="http://www.cdc.gov/nchs/about/otheract/icd9/abticd9.htm" title="ICD-9-CM" target="_blank">ICD-9-CM</a> standards and Clinical Classification
Software (<a href="http://www.hcup-us.ahrq.gov/toolssoftware/ccs/ccs.jsp" title="CSS" target="_blank">CCS</a>) hierarchy.
</li>
<li>
Medications &#8211; Medications are identified by the Unified Medical Language System (UMLS) <a href="http://www.nlm.nih.gov/research/umls/rxnorm/" title="RxNorm" target="_blank">RxNorm</a> (Ingredient) and the Veterans Administration
(VA) National Drug File Reference Terminology (<a href="http://bioportal.nci.nih.gov/ncbo/faces/pages/ontology_details.xhtml?ontology_display_name=National%20Drug%20File%20-%20Reference%20Terminology" title="NDR-RT" target="_blank">NDF-RT</a>) hierarchy.
</li>
<li>
Lab Tests &#8211; Data on lab tests is derived from the Clinical Data Repository (CDR). Data are identified by Logical Observation Identifiers
Names and Codes (<a href="http://loinc.org/" title="LOINC" target="_blank">LOINC</a>) and Partners HealthCare System.
</li></ul>
<p>
The Core ontology was constructed following recommendations of relevant government and private sector bodies using a pragmatic approach. It is a static snapshot of underlying standards. As they change (for example, there are regular updates of ICD-9-CM and RxNorm), we
expect that the Core ontology will follow after a reasonable delay to accommodate the effort of introducing the changes, resolving issues and completing quality
assurance processes.
</p>
</td>
</tr>
</table>
</div>
<div id="footer">
<p>Please use our <a href="http://cbmi.catalyst.harvard.edu/formsJsf/shrine_feedback.jsf" target=_BLANK>Feedback</a> form to contact the SHRINE team or to request assistance.</p>
</div>
</body>
</html>

Event Timeline

c4science · Help