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shrine-medco/shrine-webclient/src/main/html/js-i2b2/cells/plugins/MedCo/i2b2_msgs.js
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i2b2_msgs.js
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// create the communicator Object
i2b2.MedCo.ajax = i2b2.hive.communicatorFactory("MedCo");
i2b2.MedCo.cfg.msgs = {};
i2b2.MedCo.cfg.parsers = {};
// ================================================================================================== //
// --- metadata request (init)
i2b2.MedCo.cfg.msgs.medco_metadata_request = '<?xml version="1.0" encoding="UTF-8" standalone="yes"?>\r'+
'<ns6:request xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/"\r'+
' xmlns:ns7="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/"\r'+
' xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/pdo/1.1/"\r'+
' xmlns:ns5="http://www.i2b2.org/xsd/hive/plugin/"\r'+
' xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/"\r'+
' xmlns:ns8="http://www.i2b2.org/xsd/hive/gen/"\r'+
' xmlns:ns9="http://lca1.epfl.ch/xsd/medco/i2b2/"\r'+
' xmlns:ns6="http://www.i2b2.org/xsd/hive/msg/1.1/">\r'+
' <message_header>\n'+
' {{{proxy_info}}}'+
' <sending_application>\n'+
' <application_name>SHRINE_MedCo_webclient_plugin</application_name>\n'+
' <application_version>0.1</application_version>\n'+
' </sending_application>\n'+
' <sending_facility>\n'+
' <facility_name>MedCo Client</facility_name>\n'+
' </sending_facility>\n'+
' <receiving_application>\n'+
' <application_name>SHRINE_MedCo_Server</application_name>\n'+
' <application_version>0.1</application_version>\n'+
' </receiving_application>\n'+
' <receiving_facility>\n'+
' <facility_name>MedCo SHRINE</facility_name>\n'+
' </receiving_facility>\n'+
//' <message_type>\n'+
//' <message_code>Q04</message_code>\n'+
//' <event_type>EQQ</event_type>\n'+
//' </message_type>\n'+
' <security>\n'+
' <domain>{{{sec_domain}}}</domain>\n'+
' <username>{{{sec_user}}}</username>\n'+
' {{{sec_pass_node}}}\n'+
' </security>\n'+
' <message_control_id>\n'+
' <message_num>{{{header_msg_id}}}</message_num>\n'+
' <instance_num>0</instance_num>\n'+
' </message_control_id>\n'+
' <processing_id>\n'+
' <processing_id>P</processing_id>\n'+
' <processing_mode>I</processing_mode>\n'+
' </processing_id>\n'+
' <accept_acknowledgement_type>messageId</accept_acknowledgement_type>\n'+
' <project_id>{{{sec_project}}}</project_id>\n'+
' </message_header>\n'+
' <request_header>\n'+
' <result_waittime_ms>{{{result_wait_time}}}000</result_waittime_ms>\n'+
' </request_header>\n'+
' <message_body>\n'+
' <ns9:medco_metadata_request />\n'+
//' <query_name>{{{qname}}}</query_name>\n'+
//'{{{query_type}}}\n'+
//' <patient_set>{{{pset}}}</patient_set>\n'+
//'{{{query_definition}}}\n'+
//' </ns9:medco_metadata_request>\n'+
' </message_body>\n'+
'</ns6:request>';
i2b2.MedCo.cfg.parsers.medco_metadata_request = function() {
if (!this.error) {
this.model = [];
} else {
this.model = false;
console.error("[medco_metadata_request] Could not parse() data!");
}
return this;
}
i2b2.MedCo.ajax._addFunctionCall( "medco_metadata_request",
i2b2.MedCo.cfg.cellURL + 'getMetadata',
i2b2.MedCo.cfg.msgs.medco_metadata_request,
// ['pset', 'query_definition', 'query_type'],
[ ],
i2b2.MedCo.cfg.parsers.medco_metadata_request);
// --- annotations request
i2b2.MedCo.cfg.msgs.medco_genomic_annotations_request = '<?xml version="1.0" encoding="UTF-8" standalone="yes"?>\r'+
'<ns6:request xmlns:ns4="http://www.i2b2.org/xsd/cell/crc/psm/1.1/"\r'+
' xmlns:ns7="http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/"\r'+
' xmlns:ns3="http://www.i2b2.org/xsd/cell/crc/pdo/1.1/"\r'+
' xmlns:ns5="http://www.i2b2.org/xsd/hive/plugin/"\r'+
' xmlns:ns2="http://www.i2b2.org/xsd/hive/pdo/1.1/"\r'+
' xmlns:ns8="http://www.i2b2.org/xsd/hive/gen/"\r'+
' xmlns:ns9="http://lca1.epfl.ch/xsd/medco/i2b2/"\r'+
' xmlns:ns6="http://www.i2b2.org/xsd/hive/msg/1.1/">\r'+
' <message_header>\n'+
' {{{proxy_info}}}'+
' <sending_application>\n'+
' <application_name>SHRINE_MedCo_webclient_plugin</application_name>\n'+
' <application_version>0.1</application_version>\n'+
' </sending_application>\n'+
' <sending_facility>\n'+
' <facility_name>MedCo Client</facility_name>\n'+
' </sending_facility>\n'+
' <receiving_application>\n'+
' <application_name>SHRINE_MedCo_Server</application_name>\n'+
' <application_version>0.1</application_version>\n'+
' </receiving_application>\n'+
' <receiving_facility>\n'+
' <facility_name>MedCo SHRINE</facility_name>\n'+
' </receiving_facility>\n'+
//' <message_type>\n'+
//' <message_code>Q04</message_code>\n'+
//' <event_type>EQQ</event_type>\n'+
//' </message_type>\n'+
' <security>\n'+
' <domain>{{{sec_domain}}}</domain>\n'+
' <username>{{{sec_user}}}</username>\n'+
' {{{sec_pass_node}}}\n'+
' </security>\n'+
' <message_control_id>\n'+
' <message_num>{{{header_msg_id}}}</message_num>\n'+
' <instance_num>0</instance_num>\n'+
' </message_control_id>\n'+
' <processing_id>\n'+
' <processing_id>P</processing_id>\n'+
' <processing_mode>I</processing_mode>\n'+
' </processing_id>\n'+
' <accept_acknowledgement_type>messageId</accept_acknowledgement_type>\n'+
' <project_id>{{{sec_project}}}</project_id>\n'+
' </message_header>\n'+
' <request_header>\n'+
' <result_waittime_ms>{{{result_wait_time}}}000</result_waittime_ms>\n'+
' </request_header>\n'+
' <message_body>\n'+
' <ns9:medco_genomic_annotations_request>\n'+
' TODO<query_name>{{{qname}}}</query_name>\n'+
//'{{{query_type}}}\n'+
//' <patient_set>{{{pset}}}</patient_set>\n'+
//'{{{query_definition}}}\n'+
' </ns9:medco_genomic_annotations_request>\n'+
' </message_body>\n'+
'</ns6:request>';
i2b2.MedCo.cfg.parsers.medco_genomic_annotations_request = function() {
if (!this.error) {
this.model = [];
} else {
this.model = false;
console.error("[medco_genomic_annotations_request] Could not parse() data!");
}
return this;
}
i2b2.MedCo.ajax._addFunctionCall( "medco_genomic_annotations_request",
i2b2.MedCo.cfg.cellURL + 'getGenomicAnnotations',
i2b2.MedCo.cfg.msgs.medco_genomic_annotations_request,
// TODO['pset', 'query_definition', 'query_type'],
[ ],
i2b2.MedCo.cfg.parsers.medco_genomic_annotations_request);
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