template_grass_array.sh
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	#!/bin/bash

	## == Settings

	#SBATCH --account=cadmos

	#SBATCH --job-name=_job

	#SBATCH --nodes=_nodes
	#SBATCH --mem=_mem
	#SBATCH --ntasks=_tasks
	#SBATCH --cpus-per-task=_cores
	#SBATCH --time=_time

	#SBATCH --workdir ./output
	#SBATCH --mail-type=ALL
	#SBATCH --mail-user=_mail

	#SBATCH --array=1-_lines

	#SBATCH -o _job_%A_%a.out # Standard output
	#SBATCH -e _job_%A_%a.err # Standard error

	echo STARTING AT $(date)
	echo

	## ====== Specify here the needed modules

	module purge
	module use /ssoft/playground/rmsilva/spack/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/openblas/0.2.20-3jwiins/gcc/6.4.0/
	module load gcc python/2.7.14 grass

	## ====== Get slurm array ID

	N=${SLURM_ARRAY_TASK_ID}
	echo Slurm array task ID: $N
	echo

	WORKDIR=_workdir

	# variable(s) to be read from file. Copy and change -f1 to -f2 if more than one column is read in control file
	_var=`head -n ${N} $WORKDIR/_controlFile \| tail -n 1 \| cut -d' ' -f1`

	## ====== User input

	PATH_TO_SCRIPT=$WORKDIR\/_grassScript
	PATH_TO_LOCATION=_grassPath

	## ENTER OTHER USER INPUTS HERE ##

	## ===== Variable definitions

	CURR_ID=`expr $N - 1`
	MAP_NAME= ## ADD NAME ##

	echo Opening mapset $MAP_NAME
	echo

	## ===== Execute script
	grass74 -c -e $PATH_TO_LOCATION\/$MAP_NAME --exec $PATH_TO_SCRIPT ## ADD COMMAND LINE ARGUMENTS

	echo
	echo FINISHED AT $(date)