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solarPOT/grass_scripts/executables/workspace_skyview/exec_skyview_CH_batch.sh
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exec_skyview_CH_batch.sh
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#!/bin/bash
## == Settings
#SBATCH --account=cadmos
#SBATCH --job-name=skyview_batch
#SBATCH --nodes=1
#SBATCH --mem=32G
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=1
#SBATCH --time=20:00:00
#SBATCH --workdir ./output
#SBATCH --mail-type=ALL
#SBATCH --mail-user=alina.walch@epfl.ch
#SBATCH --array=1-11
#SBATCH -o skyview_batch_%A_%a.out # Standard output
#SBATCH -e skyview_batch_%A_%a.err # Standard error
echo STARTING AT $(date)
echo
## ====== Specify here the needed modules
module purge
module use /ssoft/playground/rmsilva/spack/share/spack/lmod/linux-rhel7-x86_E5v4_Mellanox/openblas/0.2.20-3jwiins/gcc/6.4.0/
module load gcc python/2.7.14 grass
## ====== Get slurm array ID
N=${SLURM_ARRAY_TASK_ID}
echo Slurm array task ID: $N
echo
# variable(s) to be read from file. Copy and change -f1 to -f2 if more than one column is read in control file
BIG_REGION=`head -n ${N} /scratch/walch/grassgis/scripts/executables/workspace_skyview/split_region_64_none.csv | tail -n 1 | cut -d' ' -f1`
SMALL_REGION=`head -n ${N} /scratch/walch/grassgis/scripts/executables/workspace_skyview/split_region_64_none.csv | tail -n 1 | cut -d' ' -f2`
## ====== User input
PATH_TO_SCRIPT=/scratch/walch/grassgis/scripts/executables/workspace_skyview/skyview_batch.sh
PATH_TO_LOCATION=/scratch/walch/grassgis/CH_skyview
## ENTER OTHER USER INPUTS HERE ##
## ===== Variable definitions
CURR_ID=`expr $N - 1`
MAP_NAME=region_$BIG_REGION\_$SMALL_REGION
echo Opening mapset $MAP_NAME
echo
## ===== Execute script
grass74 -c -e $PATH_TO_LOCATION\/$MAP_NAME --exec $PATH_TO_SCRIPT $BIG_REGION $SMALL_REGION
echo
echo FINISHED AT $(date)
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