submit_template.sh
72d4dec17468master

submit_template.sh
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			#!/bin/bash

			## ====== Settings

			#SBATCH --nodes 1
			## --> nr. nodes is >1 for MPI

			## specific for GPU nodes (free account)
			_part

			#SBATCH --mem _mem
			#SBATCH --ntasks 1
			#SBATCH --cpus-per-task _cores
			#SBATCH --time _time

			#SBATCH --workdir ./output
			#SBATCH --mail-type=ALL
			#SBATCH --mail-user=_mail

			echo STARTING AT $(date)

			## ====== Specify here the needed modules

			module purge
			module load gcc cuda python/3.6.1
			#module load netcdf/4.4.1.1
			source activate _virtenv

			## ===== Specify here the commands to execute

			## Convert the jupyter notebook in python
			#jupyter nbconvert --to=python _python.ipynb

			## Run. Argument to pass (in order): data location, dataset name, query name, #estimators, # nodes, partition (CPU or GPU)
			python $SCRATCH/workspace__model__dataset/_python.py _datadir _dataset _qry _estimators _node _accel

			source deactivate

			echo FINISHED AT $(date)