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specmicp/CMakeLists.txt
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CMakeLists.txt
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####################################################
# #
# SpecMiCP : CMakeLists.txt #
# #
####################################################
project(specmicp)
cmake_minimum_required(VERSION 3.2)
# CMake Options
# =============
# For an explanation of the options see the INSTALL file
option( SPECMICP_USE_OPENMP "Use OpenMP for parallelisation" ON )
option( SPECMICP_NO_DEBUG "Disable SpecMiCP assert" OFF )
option( SPECMICP_BUILD_STATIC "Build static libraries" OFF )
option( SPECMICP_BUILD_EXAMPLE "Build the examples" ON )
option( SPECMICP_BENCHMARK "Build benchmark" OFF )
option( SPECMICP_TEST "Enable testing" ON )
option( SPECMICP_BINARIES_USE_STATIC "Executables use static libraries" OFF )
# the following is only a debug options for developpers
option( SPECMICP_DEBUG_EQUATION_FD_JACOBIAN "Use a finite difference jacobian" OFF )
# PGO sequence
option( SPECMICP_PROFILE_GENERATE "Generate profile for PGO optimization" OFF )
option( SPECMICP_PROFILE_USE "Use profile for PGO optimization" OFF )
# LTO optimization
option( SPECMICP_LTO "Use link time optimization" OFF )
option( SPECMICP_LD_GOLD "Use GNU gold linker" ON )
# global variables
# ================
set(SPECMICP_VERSION 0.0.4)
# External Package
# ================
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${PROJECT_SOURCE_DIR}/cmake)
# OpenMP
#-------
# not required but recommended
if(SPECMICP_USE_OPENMP)
find_package(OpenMP)
if (OPENMP_FOUND)
set(SPECMICP_HAVE_OPENMP ON)
endif(OPENMP_FOUND)
endif()
# Eigen
# -----
find_package(Eigen3 REQUIRED) # This module comes from the Eigen3 Package
include_directories(${EIGEN3_INCLUDE_DIR})
# Eigen unsuported
# GMRES.h is really the file we are using/looking for
# If it doesn't exist then the solver will not be included in the list of the parse solvers
set( EIGEN_GMRES_PATH "${EIGEN3_INCLUDE_DIR}/unsupported/Eigen/src/IterativeSolvers/GMRES.h")
if( EXISTS ${EIGEN_GMRES_PATH} )
add_definitions(-DEIGEN_UNSUPPORTED_FOUND)
include_directories("${EIGEN3_INCLUDE_DIR}/unsupported/")
endif()
# Yaml-cpp
# --------
include(FindPkgConfig)
pkg_check_modules(YAML REQUIRED yaml-cpp>=0.5)
include_directories(${YAML_INCLUDE_DIRS})
link_directories(${YAML_LIBRARY_DIRS})
# HDF5
# ----
find_package(HDF5 REQUIRED COMPONENTS C CXX)
# HDF5 is optional, must be checked by files that used it
# glibc functions
# ---------------
include(CheckIncludeFile)
include(CheckFunctionExists)
macro(check_required_include name var)
CHECK_INCLUDE_FILE( ${name} ${var} )
if (NOT ${var})
message(SEND_ERROR "Missing required include ${name}")
endif()
endmacro(check_required_include)
check_required_include( "string.h" HAVE_STRING_H )
check_required_include( "dirent.h" HAVE_DIRENT_H )
check_required_include( "unistd.h" HAVE_UNISTD_H )
check_required_include( "sys/stat.h" HAVE_SYS_STAT_H )
check_required_include( "limits.h" HAVE_LIMITS_H )
check_required_include( "stdlib.h" HAVE_STDLIB_H )
CHECK_INCLUDE_FILE( "sys/time.h" HAVE_TIME_H )
CHECK_INCLUDE_FILE( "sys/resource.h" HAVE_RESOURCE_H )
if (${HAVE_TIME_H} AND ${HAVE_RESOURCE_H})
CHECK_FUNCTION_EXISTS("getrusage" SPECMICP_HAVE_GETRUSAGE)
endif()
CHECK_FUNCTION_EXISTS( "secure_getenv" SPECMICP_HAVE_SECURE_GETENV )
# sanitizer
# ---------
# to check memory, undefined behavior and all...
include(SanitizerBuild)
# compilation flags
# ============================================================================
# check the availability of :
# require C++11 standard by default
set(CMAKE_CXX_STANDARD 11)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
# -fuse-ld=gold
include(gold_linker)
# pgo optimization
include(pg_optimization)
# -fvisibility-hidden
include(visibility_flag)
# just a friendly warning
if(NOT UNIX)
message(WARNING "Not tested on non linux platform ! Probably won't work")
endif()
include(lto)
# set the flags
# -------------
if (OPENMP_FOUND)
SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
endif()
# let's be pedantic, it's always fun
SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -pedantic")
# always best to check what we do...
message(STATUS "c++ flags : ${CMAKE_CXX_FLAGS}")
# Directories
#########################################################################
# use gnu coding standards
include(GNUInstallDirs)
# the libraries install dir
set( LIBRARY_INSTALL_DIR
${CMAKE_INSTALL_FULL_LIBDIR}
CACHE PATH "Installation directory for libraries"
)
# the static libraries install dir
set( STATIC_LIBRARY_INSTALL_DIR
${CMAKE_INSTALL_FULL_LIBDIR}
CACHE PATH "Installation directory for static libraries"
)
# Binaries
# --------
set( BIN_INSTALL_DIR
${CMAKE_INSTALL_FULL_BINDIR}
CACHE PATH "Installation directory for the programs"
)
# include
#--------
set( INCLUDE_INSTALL_DIR
${CMAKE_INSTALL_FULL_INCLUDEDIR}
CACHE PATH "Installation directory for the headers"
)
# share
#------
set( SHARE_INSTALL_DIR
"${CMAKE_INSTALL_FULL_DATADIR}/specmicp/"
CACHE PATH "Installation directory for the miscalleneous files..."
)
mark_as_advanced(
LIBRARY_INSTALL_DIR
STATIC_LIBRARY_INSTALL_DIR
BIN_INSTALL_DIR
INCLUDE_INSTALL_DIR
SHARE_INSTALL_DIR
)
# CPP API : SpecMiCP / ReactMiCP
#########################################################################
# the main source directory - the c++ api
set(SPECMICP_CPP_API ${CMAKE_CURRENT_SOURCE_DIR}/src)
include_directories( ${SPECMICP_CPP_API} )
add_subdirectory( ${SPECMICP_CPP_API} )
# the necessary libraries to link to
set( SPECMICP_LIBS # just speciation solver
specmicp specmicp_database specmicp_common ${YAML_LIBRARIES}
)
set( REACTMICP_LIBS # reactive transport solver
reactmicp dfpm ${SPECMICP_LIBS}
)
# static versions
set( SPECMICP_STATIC_LIBS
specmicp_static specmicp_database_static specmicp_common_static ${YAML_LIBRARIES}
)
set( REACTMICP_STATIC_LIBS
reactmicp_static dfpm_static ${SPECMICP_STATIC_LIBS}
)
# Databases
#########################################################################
add_subdirectory( data )
# Documentation
#########################################################################
# "common" documentation
# -----------------------
set(
DOCS_LIST
${CMAKE_CURRENT_SOURCE_DIR}/README.md
${CMAKE_CURRENT_SOURCE_DIR}/INSTALL
${CMAKE_CURRENT_SOURCE_DIR}/COPYING
)
add_custom_target(docs SOURCES ${DOCS_LIST})
install(FILES ${DOCS_LIST}
DESTINATION ${SHARE_INSTALL_DIR}
)
# scripts
# --------
add_subdirectory( scripts )
# Doxygen documentation
# ---------------------
add_subdirectory( doc )
# Tests
#########################################################################
if( SPECMICP_TEST )
enable_testing(true)
endif()
add_subdirectory( tests )
# Examples
#########################################################################
add_subdirectory( examples )
# Benchmark
########################################################################
if (SPECMICP_BENCHMARK)
add_subdirectory( benchmark )
endif()
# Docker
########################################################################
file(COPY
docker/Dockerfile
docker/run_tests.sh
DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/docker
)
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