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specmicp/tests/common/hdf5_all.cpp
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hdf5_all.cpp
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#include "catch.hpp"
#include "utils/io/hdf5_eigen.hpp"
#include "utils/io/hdf5_timesteps.hpp"
using namespace specmicp::io;
TEST_CASE("HDF5 timesteps", "[io],[hdf5],[timesteps]")
{
HDF5File file_in("test_hdf5_timesteps.hdf5", HDF5_OpenMode::CreateTruncate);
file_in.create_group("/not_a_timestep");
file_in.create_group("/11.1");
file_in.create_group("/22.2");
file_in.create_group("/33.3");
file_in.create_group("/44.4");
file_in.close();
SECTION("Read file")
{
HDF5File file_out("test_hdf5_timesteps.hdf5", HDF5_OpenMode::OpenReadOnly);
auto nb = file_out.get_number_objects();
CHECK(nb == 5);
HDF5Timesteps timesteps(file_out);
CHECK(timesteps.size() == 4);
CHECK(timesteps.get_number("22.2") == 22.2);
CHECK(timesteps.get_string(11.1) == "11.1");
CHECK(timesteps.get_string(22.2) == "22.2");
CHECK(timesteps.get_string(33.3) == "33.3");
CHECK(timesteps.get_string(44.4) == "44.4");
CHECK(timesteps.get_string(33.2) == "33.3");
CHECK_THROWS(timesteps.get_string(55.5) == "55.5");
}
}
TEST_CASE("HDF5_eigen", "[io],[hdf5],[eigen]")
{
SECTION("Simple case") {
Eigen::Matrix2d mat;
mat << 1, 2, 3, 4;
HDF5File file("test_eigen_simple_case.hdf5", HDF5_OpenMode::CreateTruncate);
auto matrix_group = file.create_group("/matrix");
save_eigen_matrix(*matrix_group.get(), "Double 2x2 matrix", mat);
Eigen::Matrix2d matr;
read_eigen_matrix(*matrix_group.get(), "Double 2x2 matrix", matr);
CHECK(matr.cols() == 2);
CHECK(matr.rows() == 2);
CHECK(matr(1, 1) == 4);
CHECK(matr(1, 0) == 3);
Eigen::Matrix4i mat2;
mat2 << 1, 2, 3, 4,
5, 6, 7, 8,
1, 2, 3, 4,
5, 6, 7, 8;
auto dataset = save_eigen_matrix(file, "Integer 4x4 matrix", "/matrix", mat2);
Eigen::MatrixXi matr2;
read_eigen_matrix(*dataset.get(), matr2);
CHECK(matr2.rows() == 4);
CHECK(matr2.cols() == 4);
CHECK(matr2(1, 2) == mat2(1, 2));
CHECK(matr2(2, 3) == mat2(2, 3));
CHECK(matr2(3, 1) == mat2(3, 1));
Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor> mat3;
mat3.resize(4, 4);
mat3 << 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4, 1, 2, 3, 4;
save_eigen_matrix(file, "Row major matrix", "/matrix", mat3);
Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::RowMajor> matr3;
read_eigen_matrix(file, "Row major matrix", "/matrix", matr3);
CHECK(mat3.rows() == matr3.rows());
CHECK(mat3.cols() == matr3.cols());
CHECK(mat3.norm() == matr3.norm());
CHECK(mat3(1, 1) == matr3(1, 1));
CHECK(mat3(2, 3) == matr3(2, 3));
Eigen::VectorXd vec1(6);
vec1 << 1, 2, 3, 4, 5, 6;
auto vector_group = file.create_group("/vector");
save_eigen_matrix(file, "double 6x1 vector", "/vector", vec1);
Eigen::VectorXd vec2;
read_eigen_matrix(file, "double 6x1 vector", "/vector", vec2);
CHECK(vec2.rows() == vec1.rows());
CHECK(vec2.norm() == vec1.norm());
}
}
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