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eqcurve_coupler.hpp
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eqcurve_coupler.hpp
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/*-------------------------------------------------------------------------------
Copyright (c) 2014,2015 F. Georget <fabieng@princeton.edu>, Princeton University
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation and/or
other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its contributors
may be used to endorse or promote products derived from this software without
specific prior written permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-----------------------------------------------------------------------------*/
#ifndef SPECMICP_REACTMICP_EQCURVECOUPLER_HPP
#define SPECMICP_REACTMICP_EQCURVECOUPLER_HPP
#include "eqcurve_extractor.hpp"
#include "dfpm/meshes/mesh1dfwd.hpp"
#include "dfpm/1dtransport/diffusion.hpp"
#include "dfpmsolver/parabolic_driver.hpp"
namespace specmicp {
namespace dfpm {
class SaturatedDiffusion1DParameters;
} // end namespace dfpm
namespace reactmicp {
namespace eqcurve {
class EquilibriumCurveCoupler
{
public:
EquilibriumCurveCoupler(Matrix& eq_curve,
mesh::Mesh1DPtr the_mesh,
dfpmsolver::ParabolicDriverOptions options
);
void run_step(scalar_t timestep);
Vector& solid_concentrations() {return m_solid_concentrations;}
Vector& aqueous_concentrations() {return m_aqueous_concentrations;}
void chemistry_step();
private:
EquilibriumCurveExtractor m_eqcurve;
mesh::Mesh1DPtr m_mesh;
std::shared_ptr<dfpm::SaturatedDiffusion1DParameters> m_param;
Vector m_aqueous_concentrations;
Vector m_solid_concentrations;
dfpm::SaturatedDiffusion1D m_transport_program;
dfpmsolver::ParabolicDriver<dfpm::SaturatedDiffusion1D> m_transport_solver;
};
} // end namespace eqcurve
} // end namespace reactmicp
} // end namespace specmicp
#endif // SPECMICP_REACTMICP_EQCURVECOUPLER_HPP

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