short_iter.sh
a39bd5f94ba0dev

short_iter.sh
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			#!/bin/bash

			# Find the python script
			# Find the true directory of this bash script
			# https://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in
			SOURCE="${BASH_SOURCE[0]}"
			while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
			DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"
			SOURCE="$(readlink "$SOURCE")"
			[[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
			done
			DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )"

			test_src=${DIR}/short_iter.py
			if [[ ! -f ${test_src} ]]
			then
			echo "Unable to find python module. Aborting" >&2;
			exit ${RETCODE_BAD_PYTHON_MODULE};
			else
			python_script=${test_src}
			fi

			# Analyse the iter file from ReactMiCP to extract useful information without

			# copy beginning file
			head -n 8 $1 > tmp_head
			# copy end file
			tail -n 14 $1 > tmp_tail
			# run python script
			python ${python_script} $1 $2

			# paste all together
			cat tmp_head $2 tmp_tail > tmp_short
			mv tmp_short $2
			rm tmp_head
			rm tmp_tail