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specmicp/cmake/UseCython.cmake
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UseCython.cmake
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# Define a function to create Cython modules.
#
# For more information on the Cython project, see http://cython.org/.
# "Cython is a language that makes writing C extensions for the Python language
# as easy as Python itself."
#
# This file defines a CMake function to build a Cython Python module.
# To use it, first include this file.
#
# include( UseCython )
#
# Then call cython_add_module to create a module.
#
# cython_add_module( <module_name> <src1> <src2> ... <srcN> )
#
# To create a standalone executable, the function
#
# cython_add_standalone_executable( <executable_name> [MAIN_MODULE src1] <src1> <src2> ... <srcN> )
#
# To avoid dependence on Python, set the PYTHON_LIBRARY cache variable to point
# to a static library. If a MAIN_MODULE source is specified,
# the "if __name__ == '__main__':" from that module is used as the C main() method
# for the executable. If MAIN_MODULE, the source with the same basename as
# <executable_name> is assumed to be the MAIN_MODULE.
#
# Where <module_name> is the name of the resulting Python module and
# <src1> <src2> ... are source files to be compiled into the module, e.g. *.pyx,
# *.py, *.c, *.cxx, etc. A CMake target is created with name <module_name>. This can
# be used for target_link_libraries(), etc.
#
# The sample paths set with the CMake include_directories() command will be used
# for include directories to search for *.pxd when running the Cython complire.
#
# Cache variables that effect the behavior include:
#
# CYTHON_ANNOTATE
# CYTHON_NO_DOCSTRINGS
# CYTHON_FLAGS
#
# Source file properties that effect the build process are
#
# CYTHON_IS_CXX
#
# If this is set of a *.pyx file with CMake set_source_files_properties()
# command, the file will be compiled as a C++ file.
#
# See also FindCython.cmake
#=============================================================================
# Copyright 2011 Kitware, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#=============================================================================
# Configuration options.
set( CYTHON_ANNOTATE OFF
CACHE BOOL "Create an annotated .html file when compiling *.pyx." )
set( CYTHON_NO_DOCSTRINGS OFF
CACHE BOOL "Strip docstrings from the compiled module." )
set( CYTHON_FLAGS "" CACHE STRING
"Extra flags to the cython compiler." )
mark_as_advanced( CYTHON_ANNOTATE CYTHON_NO_DOCSTRINGS CYTHON_FLAGS )
find_package( Cython REQUIRED )
find_package( PythonLibs REQUIRED )
set( CYTHON_CXX_EXTENSION "cxx" )
set( CYTHON_C_EXTENSION "c" )
# Create a *.c or *.cxx file from a *.pyx file.
# Input the generated file basename. The generate file will put into the variable
# placed in the "generated_file" argument. Finally all the *.py and *.pyx files.
function( compile_pyx _name generated_file )
# Default to assuming all files are C.
set( cxx_arg "" )
set( extension ${CYTHON_C_EXTENSION} )
set( pyx_lang "C" )
set( comment "Compiling Cython C source for ${_name}..." )
set( cython_include_directories "" )
set( pxd_dependencies "" )
set( c_header_dependencies "" )
set( pyx_locations "" )
foreach( pyx_file ${ARGN} )
get_filename_component( pyx_file_basename "${pyx_file}" NAME_WE )
# Determine if it is a C or C++ file.
get_source_file_property( property_is_cxx ${pyx_file} CYTHON_IS_CXX )
if( ${property_is_cxx} )
set( cxx_arg "--cplus" )
set( extension ${CYTHON_CXX_EXTENSION} )
set( pyx_lang "CXX" )
set( comment "Compiling Cython CXX source for ${_name}..." )
endif()
# Get the include directories.
get_source_file_property( pyx_location ${pyx_file} LOCATION )
get_filename_component( pyx_path ${pyx_location} PATH )
get_directory_property( cmake_include_directories DIRECTORY ${pyx_path} INCLUDE_DIRECTORIES )
list( APPEND cython_include_directories ${cmake_include_directories} )
list( APPEND pyx_locations "${pyx_location}" )
# Determine dependencies.
# Add the pxd file will the same name as the given pyx file.
unset( corresponding_pxd_file CACHE )
find_file( corresponding_pxd_file ${pyx_file_basename}.pxd
PATHS "${pyx_path}" ${cmake_include_directories}
NO_DEFAULT_PATH )
if( corresponding_pxd_file )
list( APPEND pxd_dependencies "${corresponding_pxd_file}" )
endif()
# pxd files to check for additional dependencies.
set( pxds_to_check "${pyx_file}" "${pxd_dependencies}" )
set( pxds_checked "" )
set( number_pxds_to_check 1 )
while( ${number_pxds_to_check} GREATER 0 )
foreach( pxd ${pxds_to_check} )
list( APPEND pxds_checked "${pxd}" )
list( REMOVE_ITEM pxds_to_check "${pxd}" )
# check for C header dependencies
file( STRINGS "${pxd}" extern_from_statements
REGEX "cdef[ ]+extern[ ]+from.*$" )
foreach( statement ${extern_from_statements} )
# Had trouble getting the quote in the regex
string( REGEX REPLACE "cdef[ ]+extern[ ]+from[ ]+[\"]([^\"]+)[\"].*" "\\1" header "${statement}" )
unset( header_location CACHE )
find_file( header_location ${header} PATHS ${cmake_include_directories} )
if( header_location )
list( FIND c_header_dependencies "${header_location}" header_idx )
if( ${header_idx} LESS 0 )
list( APPEND c_header_dependencies "${header_location}" )
endif()
endif()
endforeach()
# check for pxd dependencies
# Look for cimport statements.
set( module_dependencies "" )
file( STRINGS "${pxd}" cimport_statements REGEX cimport )
foreach( statement ${cimport_statements} )
if( ${statement} MATCHES from )
string( REGEX REPLACE "from[ ]+([^ ]+).*" "\\1" module "${statement}" )
else()
string( REGEX REPLACE "cimport[ ]+([^ ]+).*" "\\1" module "${statement}" )
endif()
list( APPEND module_dependencies ${module} )
endforeach()
list( REMOVE_DUPLICATES module_dependencies )
# Add the module to the files to check, if appropriate.
foreach( module ${module_dependencies} )
unset( pxd_location CACHE )
find_file( pxd_location ${module}.pxd
PATHS "${pyx_path}" ${cmake_include_directories} NO_DEFAULT_PATH )
if( pxd_location )
list( FIND pxds_checked ${pxd_location} pxd_idx )
if( ${pxd_idx} LESS 0 )
list( FIND pxds_to_check ${pxd_location} pxd_idx )
if( ${pxd_idx} LESS 0 )
list( APPEND pxds_to_check ${pxd_location} )
list( APPEND pxd_dependencies ${pxd_location} )
endif() # if it is not already going to be checked
endif() # if it has not already been checked
endif() # if pxd file can be found
endforeach() # for each module dependency discovered
endforeach() # for each pxd file to check
list( LENGTH pxds_to_check number_pxds_to_check )
endwhile()
endforeach() # pyx_file
# Set additional flags.
if( CYTHON_ANNOTATE )
set( annotate_arg "--annotate" )
endif()
if( CYTHON_NO_DOCSTRINGS )
set( no_docstrings_arg "--no-docstrings" )
endif()
if( "${CMAKE_BUILD_TYPE}" STREQUAL "Debug" OR
"${CMAKE_BUILD_TYPE}" STREQUAL "RelWithDebInfo" )
set( cython_debug_arg "--gdb" )
endif()
if( "${PYTHONLIBS_VERSION_STRING}" MATCHES "^2." )
set( version_arg "-2" )
elseif( "${PYTHONLIBS_VERSION_STRING}" MATCHES "^3." )
set( version_arg "-3" )
else()
set( version_arg )
endif()
# Include directory arguments.
list( REMOVE_DUPLICATES cython_include_directories )
set( include_directory_arg "" )
foreach( _include_dir ${cython_include_directories} )
set( include_directory_arg ${include_directory_arg} "-I" "${_include_dir}" )
endforeach()
# Determining generated file name.
set( _generated_file "${CMAKE_CURRENT_BINARY_DIR}/${_name}.${extension}" )
set_source_files_properties( ${_generated_file} PROPERTIES GENERATED TRUE )
set( ${generated_file} ${_generated_file} PARENT_SCOPE )
list( REMOVE_DUPLICATES pxd_dependencies )
list( REMOVE_DUPLICATES c_header_dependencies )
# Add the command to run the compiler.
add_custom_command( OUTPUT ${_generated_file}
COMMAND ${CYTHON_EXECUTABLE}
ARGS ${cxx_arg} ${include_directory_arg} ${version_arg}
${annotate_arg} ${no_docstrings_arg} ${cython_debug_arg} ${CYTHON_FLAGS}
--output-file ${_generated_file} ${pyx_locations}
DEPENDS ${pyx_locations} ${pxd_dependencies}
IMPLICIT_DEPENDS ${pyx_lang} ${c_header_dependencies}
COMMENT ${comment}
)
# Remove their visibility to the user.
set( corresponding_pxd_file "" CACHE INTERNAL "" )
set( header_location "" CACHE INTERNAL "" )
set( pxd_location "" CACHE INTERNAL "" )
endfunction()
# cython_add_module( <name> src1 src2 ... srcN )
# Build the Cython Python module.
function( cython_add_module _name )
set( pyx_module_sources "" )
set( other_module_sources "" )
foreach( _file ${ARGN} )
if( ${_file} MATCHES ".*\\.py[x]?$" )
list( APPEND pyx_module_sources ${_file} )
else()
list( APPEND other_module_sources ${_file} )
endif()
endforeach()
compile_pyx( ${_name} generated_file ${pyx_module_sources} )
include_directories( ${PYTHON_INCLUDE_DIRS} )
python_add_module( ${_name} ${generated_file} ${other_module_sources} )
if( APPLE )
set_target_properties( ${_name} PROPERTIES LINK_FLAGS "-undefined dynamic_lookup" )
else()
target_link_libraries( ${_name} ${PYTHON_LIBRARIES} )
endif()
endfunction()
include( CMakeParseArguments )
# cython_add_standalone_executable( _name [MAIN_MODULE src3.py] src1 src2 ... srcN )
# Creates a standalone executable the given sources.
function( cython_add_standalone_executable _name )
set( pyx_module_sources "" )
set( other_module_sources "" )
set( main_module "" )
cmake_parse_arguments( cython_arguments "" "MAIN_MODULE" "" ${ARGN} )
include_directories( ${PYTHON_INCLUDE_DIRS} )
foreach( _file ${cython_arguments_UNPARSED_ARGUMENTS} )
if( ${_file} MATCHES ".*\\.py[x]?$" )
get_filename_component( _file_we ${_file} NAME_WE )
if( "${_file_we}" STREQUAL "${_name}" )
set( main_module "${_file}" )
elseif( NOT "${_file}" STREQUAL "${cython_arguments_MAIN_MODULE}" )
set( PYTHON_MODULE_${_file_we}_static_BUILD_SHARED OFF )
compile_pyx( "${_file_we}_static" generated_file "${_file}" )
list( APPEND pyx_module_sources "${generated_file}" )
endif()
else()
list( APPEND other_module_sources ${_file} )
endif()
endforeach()
if( cython_arguments_MAIN_MODULE )
set( main_module ${cython_arguments_MAIN_MODULE} )
endif()
if( NOT main_module )
message( FATAL_ERROR "main module not found." )
endif()
get_filename_component( main_module_we "${main_module}" NAME_WE )
set( CYTHON_FLAGS ${CYTHON_FLAGS} --embed )
compile_pyx( "${main_module_we}_static" generated_file ${main_module} )
add_executable( ${_name} ${generated_file} ${pyx_module_sources} ${other_module_sources} )
target_link_libraries( ${_name} ${PYTHON_LIBRARIES} ${pyx_module_libs} )
endfunction()
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