reaction_path.pxd
edab8e64cbc6kinetics

reaction_path.pxd
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			from libcpp cimport bool
			from libcpp.string cimport string
			from libcpp.vector cimport vector
			from libcpp.pair cimport pair
			from libcpp.map cimport map as cmap

			from eigen cimport VectorXd
			from memory cimport shared_ptr
			from database cimport DataContainer
			from solver_options cimport MiCPPerformance, ReducedSystemSolverOptions
			from equilibrium_state cimport EquilibriumState

			cdef extern from "specmicp/reaction_path.hpp" namespace "specmicp":
			cdef cppclass ReactionPathModel:
			cmap[string, pair[float, float]] amount_aqueous
			cmap[string, pair[float, float]] amount_minerals
			vector[string] minerals_to_keep
			int nb_step

			cdef cppclass ReactionPathDriver:
			ReactionPathDriver(shared_ptr[ReactionPathModel],
			shared_ptr[DataContainer])
			ReactionPathDriver(shared_ptr[ReactionPathModel],
			shared_ptr[DataContainer],
			ReducedSystemSolverOptions)
			ReactionPathDriver(shared_ptr[ReactionPathModel],
			shared_ptr[DataContainer],
			VectorXd&,
			ReducedSystemSolverOptions)
			ReactionPathDriver(shared_ptr[ReactionPathModel],
			shared_ptr[DataContainer],
			VectorXd&)
			MiCPPerformance one_step(VectorXd&, bool)
			MiCPPerformance one_step(VectorXd&)
			EquilibriumState get_current_solution()
			ReducedSystemSolverOptions* get_ptr_options()