canonicalizer.hpp
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	/*-------------------------------------------------------

	- Module : database
	- File : canonicalizer
	- Author : Fabien Georget

	Copyright (c) 2014, Fabien Georget, Princeton University

	---------------------------------------------------------*/

	#ifndef SPECMICP_DATABASE_CANONICALIZER
	#define SPECMICP_DATABASE_CANONICALIZER

	//! \file canonicalizer Transform a database into canonical form

	#include "module.hpp"

	namespace specmicp {
	namespace database {

	//! \brief Transform a database into canonical form
	//!
	//! Canonical form means that every secondary species are written as function of the components
	//!
	//! P.S : what a great name
	class DatabaseCanonicalizer: public DatabaseModule
	{
	public:
	DatabaseCanonicalizer(RawDatabasePtr thedata):
	DatabaseModule(thedata)
	{}

	//! \brief Transform the database into canonical form
	//!
	//! This process is necessary before any computation
	void make_canonical();

	private:

	//! \brief transform the aqueous system into a canonical form
	void make_aqueous_canonical();

	//! \brief transform the mineral system into a canonical form
	void make_mineral_canonical();
	//! \brief transform the mineral (governed by kineticS) system into a canonical form
	void make_mineral_kinetic_canonical();

	};

	inline void canonicalize_database(DatabaseCanonicalizer::RawDatabasePtr data)
	{
	DatabaseCanonicalizer(data).make_canonical();
	}

	} // end namespace database
	} // end namespace specmicp

	#endif // SPECMICP_DATABASE_CANONICALIZER