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specmicp/src/database/common_def.hpp
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common_def.hpp
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/*-------------------------------------------------------
- Module : database
- File : common_def.hpp
- Author : Fabien Georget
Copyright (c) 2014, Fabien Georget, Princeton University
---------------------------------------------------------*/
#ifndef SPECMICP_DATABASE_COMMONDEF_HPP
#define SPECMICP_DATABASE_COMMONDEF_HPP
#include <vector>
#include <Eigen/Core>
#include <exception>
#include <stdexcept>
//! \file common_def.hpp common type definitions
namespace specmicp {
namespace database {
//! ID of a species
using id_species_t = unsigned int;
//! Vector containing a list of species (by ID)
using list_species_t = std::vector<id_species_t>;
//! Vector containing each strings
using vector_labels_t = std::vector<std::string>;
//! Stoechiometric coefficients for the reactions
using reaction_mat_t = Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic>;
//! Vector containing logK values
using logK_vector_t = Eigen::Matrix<double, Eigen::Dynamic, 1>;
//! Vector containing molar masses
using data_vector_t = Eigen::Matrix<double, Eigen::Dynamic, 1>;
//! \brief This error is thrown when a bad syntax is detected in the database
class db_invalid_syntax : public std::invalid_argument
{
public:
db_invalid_syntax (const std::string &msg):
std::invalid_argument("Invalid syntax : " + msg)
{}
};
//! \brief This error is thrown when a bad syntax is detected in the database
class db_invalid_data : public std::invalid_argument
{
public:
db_invalid_data (const std::string &msg):
std::invalid_argument("Invalid syntax : " + msg)
{}
};
//! \brief This error is thrown when the database is not as expected
class invalid_database : public std::invalid_argument
{
public:
invalid_database (const std::string &msg):
std::invalid_argument("Invalid Database : " + msg)
{}
};
//! \brief This error is thrown when a non initialised value is wanted
class db_noninitialized_value : public std::runtime_error
{
public:
db_noninitialized_value (const std::string &value, const std::string &species):
std::runtime_error("Value was not initialized : " + value +", for species : "+species+".")
{}
};
} // end namespace database
} // end namespace specmicp
#endif // SPECMICP_DATABASE_COMMONDEF_HPP
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