#   ReactMiCP
# =============

set(REACTMICP_SOLVER_DIR solver)
set(REACTMICP_SYSTEMS_DIR systems)
set(REACTMICP_EQUILIBRIUMCURVE equilibrium_curve)
set(REACTMICP_IO io)

add_custom_target(reactmicp_incl SOURCES

    ${REACTMICP_SOLVER_DIR}/reactive_transport_solver_structs.hpp

    ${REACTMICP_SOLVER_DIR}/staggers_base/variables_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/transport_stagger_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/chemistry_stagger_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/upscaling_stagger_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/stagger_structs.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/decl.inl
    ${REACTMICP_SOLVER_DIR}/staggers_base/staggers_base.hpp


    ${REACTMICP_SYSTEMS_DIR}/saturated_react/variablesfwd.hpp

    ${REACTMICP_SYSTEMS_DIR}/unsaturated/types_fwd.hpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/variables_sub.hpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/variables_box.hpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/transport_constraints.hpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/fv_1dof_equation.hpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/fv_1dof_equation.inl
)

set(REACTMICP_LIBFILES

    ${REACTMICP_EQUILIBRIUMCURVE}/chemistry.cpp
    ${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_extractor.cpp
    ${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_coupler.cpp
    ${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_solid_transport.cpp

    # Flexible reactive transport solver
    # ----------------------------------
    ${REACTMICP_SOLVER_DIR}/reactive_transport_solver.cpp
    ${REACTMICP_SOLVER_DIR}/timestepper.cpp
    ${REACTMICP_SOLVER_DIR}/runner.cpp
    #
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/variables.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_program.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_stagger.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/equilibrium_stagger.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/kinetic_stagger.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/react_solver.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/init_variables.cpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/diffusive_upscaling_stagger.cpp


    ${REACTMICP_SYSTEMS_DIR}/unsaturated/variables.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/saturation_equation.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/saturation_pressure_equation.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/pressure_equation.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/aqueous_equation.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/aqueous_pressure_equation.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/transport_stagger.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/equilibrium_stagger.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/variables_interface.cpp
    ${REACTMICP_SYSTEMS_DIR}/unsaturated/equilibrium_constraints.cpp

    ${REACTMICP_IO}/reactive_transport.cpp
    ${REACTMICP_IO}/saturated_react.cpp
    ${REACTMICP_IO}/configuration.cpp
)

# hdf5
# -----
if (HDF5_FOUND)
    list(APPEND REACTMICP_LIBFILES ${REACTMICP_IO}/hdf5_unsaturated.cpp)

    include_directories(HDF5_INCLUDE_DIRS)
    set_source_files_properties(
        ${REACTMICP_IO}/hdf5_unsaturated.cpp
        PROPERTIES COMPILE_DEFINITIONS HDF5_DEFINITIONS
    )
endif()

set_visibility_flag(${REACTMICP_LIBFILES})
set_pgo_flag(${REACTMICP_LIBFILES})

if(OPENMP_FOUND)
if(SPECMICP_USE_OPENMP)
    set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/saturated_react/equilibrium_stagger.cpp
         PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
    )
    set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/saturated_react/kinetic_stagger.cpp
         PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
    )
    set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/unsaturated/transport_stagger.cpp
         PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
    )
    set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/unsaturated/equilibrium_stagger.cpp
         PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
    )
endif()
endif()

add_library(objreactmicp OBJECT ${REACTMICP_LIBFILES})
set_property(TARGET objreactmicp PROPERTY POSITION_INDEPENDENT_CODE 1)

add_library(reactmicp SHARED $<TARGET_OBJECTS:objreactmicp>)

target_link_libraries(reactmicp dfpm)
install(TARGETS reactmicp
    LIBRARY DESTINATION ${LIBRARY_INSTALL_DIR}
)

# include files
# -------------

set(REACTMICP_STAGGERBASE_INCLUDE_LIST
    ${REACTMICP_SOLVER_DIR}/staggers_base/variables_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/transport_stagger_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/chemistry_stagger_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/upscaling_stagger_base.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/stagger_structs.hpp
    ${REACTMICP_SOLVER_DIR}/staggers_base/decl.inl
    ${REACTMICP_SOLVER_DIR}/staggers_base/staggers_base.hpp
)

set(REACTMICP_SOLVER_INCLUDE_LIST
    ${REACTMICP_SOLVER_DIR}/reactive_transport_solver_structs.hpp
    ${REACTMICP_SOLVER_DIR}/reactive_transport_solver.hpp
    ${REACTMICP_SOLVER_DIR}/timestepper.hpp
    ${REACTMICP_SOLVER_DIR}/runner.hpp
)

set(REACTMICP_SATURATEDREACT_INCLUDE_LIST
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/variablesfwd.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/variables.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_program.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_stagger.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/equilibrium_stagger.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/kinetic_stagger.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/react_solver.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/init_variables.hpp
    ${REACTMICP_SYSTEMS_DIR}/saturated_react/diffusive_upscaling_stagger.hpp
)

set(REACTMICP_EQUILIBRIUMCURVE_INCLUDE_LIST
    ${REACTMICP_EQUILIBRIUMCURVE}/chemistry.cpp
    ${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_extractor.cpp
    ${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_coupler.cpp
    ${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_solid_transport.cpp

)

set(REACTMICP_IO_INCLUDE_LIST
    io/reactive_transport.hpp
    io/saturated_react.hpp
    io/configuration.hpp
)

install(FILES ${REACTMICP_STAGGERBASE_INCLUDE_LIST}
    DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/solver/staggers_base
)
install(FILES ${REACTMICP_SOLVER_INCLUDE_LIST}
    DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/solver
)
install(FILES ${REACTMICP_SATURATEDREACT_INCLUDE_LIST}
    DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/systems/saturated_react
)
install(FILES ${REACTMICP_EQUILIBRIUMCURVE_INCLUDE_LIST}
    DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/equilibrium_curve
)
install(FILES ${REACTMICP_IO_INCLUDE_LIST}
    DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/io
)



# static libraries
# ----------------

if(SPECMICP_BUILD_STATIC)
    add_library(reactmicp_static STATIC $<TARGET_OBJECTS:objreactmicp>)
    install(TARGETS reactmicp_static
        ARCHIVE DESTINATION ${STATIC_LIBRARY_INSTALL_DIR}
    )
else()
    add_library(reactmicp_static EXCLUDE_FROM_ALL STATIC $<TARGET_OBJECTS:objreactmicp>)
endif()

set_target_properties(reactmicp_static  PROPERTIES OUTPUT_NAME reactmicp)
target_link_libraries(reactmicp_static dfpm_static)