Homec4science
Diffusion SpecMiCP / ReactMiCP (reactivetransport) Browse

specmicp/cython/CMakeLists.txt
8b5357988ba5reactivetransport

Last Change
Raw File

CMakeLists.txt
View Options

# ======================= #
# #
# Python specmicp lib #
# #
# ======================= #
# Build the cython interface
# ==========================
find_package(PythonLibs REQUIRED)
include_directories(${PYTHON_INCLUDE_PATH})
# main variables
# ===============
# directories
# -----------
set(PY_SPECMICP_SOURCE_DIR ${CMAKE_CURRENT_SOURCE_DIR}/specmicp)
set(PY_SPECMICP_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/specmicp)
set(PY_INCLUDES_DIR ${CMAKE_CURRENT_SOURCE_DIR}/includes)
# cython flags
# ------------
set(CYTHON_FLAGS -3 --cplus -Wextra -I ${PY_INCLUDES_DIR})
# cython compilation macro
# ------------------------
# USAGE : cython_compilation(dir base_name dependancies)
macro(cython_compilation dir base_name)
add_custom_command(
OUTPUT ${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${base_name}.cpp
COMMAND cython ${CYTHON_FLAGS} -I ${dir} -o ${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/${base_name}.cpp ${dir}/${base_name}.pyx
DEPENDS ${ARGN})
# ${ARGN} is the list of arguments passed after the last expected argument
# i.e. ${ARGN} = dependancies
endmacro(cython_compilation)
# common includes
# ===============
add_custom_target(cython_includes SOURCES
${PY_INCLUDES_DIR}/memory.pxd
${PY_INCLUDES_DIR}/eigen.pxd
)
# specmicp module
# ===============
file(COPY ${PY_SPECMICP_SOURCE_DIR}/__init__.py
DESTINATION ${PY_SPECMICP_BINARY_DIR}
)
# specmicp.database
# =================
# Sources
add_custom_target(cython_specmicp_database_files SOURCES
${PY_SPECMICP_SOURCE_DIR}/database.pxd
${PY_SPECMICP_SOURCE_DIR}/database.pyx
)
set(cython_database_dependancies
${PY_SPECMICP_SOURCE_DIR}/database.pxd
${PY_SPECMICP_SOURCE_DIR}/database.pyx
${PY_INCLUDES_DIR}/memory.pxd
${PY_INCLUDES_DIR}/eigen.pxd
)
# Cython compilation
cython_compilation(${PY_SPECMICP_SOURCE_DIR} database ${cython_database_dependancies})
# build the specmicp.database library
add_library(database SHARED ${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/database.cpp ${DATABASE_LIBFILE})
set_target_properties(database
PROPERTIES PREFIX ""
LIBRARY_OUTPUT_DIRECTORY "${PY_SPECMICP_BINARY_DIR}"
)
#target_link_libraries(database specmicp_database)
# specmicp.equilibrium_state
# ==========================
# Sources
add_custom_target(cython_specmicp_equilibrium_state_files SOURCES
${PY_SPECMICP_SOURCE_DIR}/equilibrium_state.pxd
${PY_SPECMICP_SOURCE_DIR}/equilibrium_state.pyx
)
set(cython_equilibrium_state_dependancies
${PY_SPECMICP_SOURCE_DIR}/equilibrium_state.pxd
${PY_SPECMICP_SOURCE_DIR}/equilibrium_state.pyx
${PY_INCLUDES_DIR}/eigen.pxd
)
# Cython compilation
cython_compilation(${PY_SPECMICP_SOURCE_DIR} equilibrium_state ${cython_equilibrium_state_dependancies})
add_library(equilibrium_state SHARED
${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/equilibrium_state.cpp
${SPECMICP_LIBFILE}
${DATABASE_LIBFILE})
set_target_properties(equilibrium_state
PROPERTIES PREFIX ""
LIBRARY_OUTPUT_DIRECTORY "${PY_SPECMICP_BINARY_DIR}"
)
target_link_libraries(equilibrium_state jsoncpp)
# specmic.reaction_path
# =====================
# Sources
add_custom_target(cython_specmicp_reaction_path_files SOURCES
${PY_SPECMICP_SOURCE_DIR}/solver_options.pxd
${PY_SPECMICP_SOURCE_DIR}/reaction_path.pxd
${PY_SPECMICP_SOURCE_DIR}/reaction_path.pyx
)
set(cython_reaction_path_dependancies
${PY_SPECMICP_SOURCE_DIR}/solver_options.pxd
${PY_SPECMICP_SOURCE_DIR}/equilibrium_state.pxd
${PY_SPECMICP_SOURCE_DIR}/equilibrium_state.pyx
${PY_SPECMICP_SOURCE_DIR}/reaction_path.pxd
${PY_SPECMICP_SOURCE_DIR}/reaction_path.pyx
${PY_INCLUDES_DIR}/eigen.pxd
)
# Cython compilation
cython_compilation(${PY_SPECMICP_SOURCE_DIR} reaction_path ${cython_reaction_path_dependancies})
# build the specmicp.reaction_path library
add_library(reaction_path SHARED
${CMAKE_CURRENT_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/reaction_path.cpp
${SPECMICP_LIBFILE}
${DATABASE_LIBFILE})
set_target_properties(reaction_path
PROPERTIES PREFIX ""
LIBRARY_OUTPUT_DIRECTORY "${PY_SPECMICP_BINARY_DIR}"
)
target_link_libraries(reaction_path jsoncpp)
# ========== #
# #
# TEST #
# #
# ========== #
# Prelude
# =======
# directories
# -----------
set(TEST_DIR ${CMAKE_CURRENT_SOURCE_DIR}/../tests/cython)
set(BINARY_TEST_DIR ${CMAKE_CURRENT_BINARY_DIR}/tests)
# variables to configure the scripts
# ----------------------------------
set(python_module_path ${CMAKE_CURRENT_BINARY_DIR})
set(database_path ${CMAKE_CURRENT_BINARY_DIR}/../data/cemdata_specmicp.js)
# macro to configure the scripts
# -------------------------------
macro(configure_python_test test_name)
configure_file(${TEST_DIR}/${test_name} ${BINARY_TEST_DIR}${CMAKE_FILES_DIRECTORY}/${test_name} @ONLY)
file(COPY ${BINARY_TEST_DIR}${CMAKE_FILES_DIRECTORY}/${test_name}
DESTINATION ${BINARY_TEST_DIR}
FILE_PERMISSIONS OWNER_READ OWNER_WRITE OWNER_EXECUTE GROUP_READ
GROUP_EXECUTE WORLD_READ WORLD_EXECUTE)
endmacro(configure_python_test)
# Scripts
# =======
# database unittest
configure_python_test(database.py)
# thermocarbo
configure_python_test(thermocarbo.py)
c4science · Help