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specmicp/CMakeLists.txt
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CMakeLists.txt
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####################################################
# #
# SpecMiCP : CMakeLists.txt #
# #
####################################################
project(specmicp)
cmake_minimum_required(VERSION 2.8.8)
# Configuration options
# ======================
# For an explanation of the options see the INSTALL file
option(SPECMICP_USE_OPENMP "Thread parallelisation of specmicp instances if available" ON)
option(SPECMICP_NO_DEBUG "Disable SpecMiCP assert" OFF)
option(SPECMICP_BUILD_STATIC "Build static libraries" OFF)
option(SPECMICP_BUILD_EXAMPLE "Build the examples" ON)
option(SPECMICP_BUILD_CYTHON "Build the cython module" ON)
option(SPECMICP_DEBUG_EQUATION_FD_JACOBIAN "Use a finite difference jacobian is specmicp" OFF)
# PGO sequence
option(SPECMICP_PROFILE_GENERATE "Generate the profile for PGO optimization" OFF)
option(SPECMICP_PROFILE_USE "Use the generated profile for PGO optimization" OFF)
# global variables
# ================
set(SPECMICP_VERSION 0.0.3)
# External Package
# ================
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${PROJECT_SOURCE_DIR}/cmake)
# OpenMP
#-------
# not required but recommended
if(SPECMICP_USE_OPENMP)
find_package(OpenMP)
endif()
# Boost
# -----
find_package(Boost REQUIRED)
include_directories(${Boost_INCLUDE_DIR})
# Eigen
# -----
find_package(Eigen3 REQUIRED) # This module comes from the Eigen3 Package
include_directories(${EIGEN3_INCLUDE_DIR})
# Eigen unsuported
# GMRES.h is really the file we are using/looking for
# If it doesn't exist then the solver will not be included in the list of the parse solvers
if(EXISTS "${EIGEN3_INCLUDE_DIR}/unsupported/Eigen/src/IterativeSolvers/GMRES.h")
add_definitions(-DEIGEN_UNSUPPORTED_FOUND)
INCLUDE_DIRECTORIES("${EIGEN3_INCLUDE_DIR}/unsupported/")
endif()
add_custom_target(cmake_incl SOURCES cmake/FindSpecMiCP.cmake)
# sanitizer
include(SanitizerBuild)
# compilation flags
# =================
# c++11
# -----
include(CheckCXXCompilerFlag)
if(NOT CX11_FLAG)
check_cxx_compiler_flag("-std=c++11" HAS_CXX11)
if(NOT HAS_CXX11)
message(FATAL_ERROR "A c++11 compatible compiler is necessary")
else()
set(CXX11_FLAG "-std=c++11")
endif()
endif()
# -fvisibility=hidden
# ---------------------
# check if the compiler supports it
check_cxx_compiler_flag("-fvisibility=hidden" HAS_VISIBILITY_HIDDEN)
# define a set of files to be compiled with the -fvisibility=hidden flag
macro(set_visibility_hidden_flag)
if (HAS_VISIBILITY_HIDDEN)
foreach(file ${ARGN})
set_source_files_properties(${file} PROPERTIES COMPILE_FLAGS -fvisibility=hidden)
endforeach()
endif()
endmacro()
file(COPY pgo_sequence.sh DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
file(COPY reactmicp.qsub DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
if(CMAKE_COMPILER_IS_GNUCXX)
if(SPECMICP_PROFILE_GENERATE)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprofile-generate")
if (SPECMICP_USE_OPENMP AND OPENMP_FOUND)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprofile-correction")
endif()
endif()
if(SPECMICP_PROFILE_USE)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprofile-use -Wno-error=coverage-mismatch")
if (SPECMICP_USE_OPENMP AND OPENMP_FOUND)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fprofile-correction")
endif()
endif()
endif()
if(UNIX)
# Use ld.gold if it is available and isn't disabled explicitly
# Ref : https://bugs.webkit.org/show_bug.cgi?id=137953
if(CMAKE_COMPILER_IS_GNUCXX)
option(USE_LD_GOLD "Use GNU gold linker" ON)
if (USE_LD_GOLD)
execute_process(COMMAND ${CMAKE_C_COMPILER} -fuse-ld=gold -Wl,--version ERROR_QUIET OUTPUT_VARIABLE LD_VERSION)
if ("${LD_VERSION}" MATCHES "GNU gold")
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fuse-ld=gold")
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fuse-ld=gold")
else ()
message(WARNING "GNU gold linker isn't available, using the default system linker.")
endif ()
endif ()
endif()
# Generic options
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CXX11_FLAG}")
if (OPENMP_FOUND)
SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}")
SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
endif()
SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -pedantic")
##SET(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG")
message(STATUS "c++ flags ${CMAKE_CXX_FLAGS}")
else()
message(WARNING "not tested !")
endif()
# Directories
#########################################################################
# 3rd party
# =========
# JsonCPP
# -------
set(JSONCPP_DIR ${PROJECT_SOURCE_DIR}/3rdparty/jsoncpp/)
add_custom_target(3rdparty_header SOURCES
${JSONCPP_DIR}/json/json.h
${JSONCPP_DIR}/json/json-forwards.h
)
include_directories(${JSONCPP_DIR})
# installation dir
# ----------------
# http://www.cmake.org/pipermail/cmake/2010-February/035466.html
# compute default library install dir
if(UNIX)
# library
# ------
set (_DEFAULT_LIBRARY_INSTALL_DIR lib)
if (EXISTS "${CMAKE_INSTALL_PREFIX}/lib32/" AND CMAKE_SIZEOF_VOID_P EQUAL 4)
set (_DEFAULT_LIBRARY_INSTALL_DIR lib32)
elif (EXISTS "${CMAKE_INSTALL_PREFIX}/lib64/" AND CMAKE_SIZEOF_VOID_P EQUAL 8)
set (_DEFAULT_LIBRARY_INSTALL_DIR lib64)
endif ()
# the library install dir
set(LIBRARY_INSTALL_DIR "${_DEFAULT_LIBRARY_INSTALL_DIR}" CACHE PATH "Installation directory for libraries")
set(STATIC_LIBRARY_INSTALL_DIR "${_DEFAULT_LIBRARY_INSTALL_DIR}/static" CACHE PATH "Installation directory for static libraries")
# make the library install dir an absolute path (can be important e.g. when using CONFIGURE_FILE to embed
# the library installation directory into a file)
if(NOT IS_ABSOLUTE "${LIBRARY_INSTALL_DIR}")
set(LIBRARY_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${LIBRARY_INSTALL_DIR}")
endif()
if(NOT IS_ABSOLUTE "${STATIC_LIBRARY_INSTALL_DIR}")
set(STATIC_LIBRARY_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${STATIC_LIBRARY_INSTALL_DIR}")
endif()
# include
#--------
set(INCLUDE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/include/specmicp")
# share
#------
set(SHARE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/share/specmicp")
else()
message(WARNING "not tested !")
endif()
enable_testing(true)
# CPP API : SpecMiCP / ReactMiCP
#########################################################################
# the main source directory - the c++ api
set(SPECMICP_CPP_API ${CMAKE_CURRENT_SOURCE_DIR}/src)
include_directories(${SPECMICP_CPP_API})
add_subdirectory( ${SPECMICP_CPP_API} )
# Database
#########################################################################
add_subdirectory( data )
# Documentation
#########################################################################
# "common" documentation
# -----------------------
set(
DOCS_LIST
${CMAKE_CURRENT_SOURCE_DIR}/README.md
${CMAKE_CURRENT_SOURCE_DIR}/INSTALL
${CMAKE_CURRENT_SOURCE_DIR}/COPYING
)
add_custom_target(docs SOURCES ${DOCS_LIST})
install(FILES ${DOCS_LIST}
DESTINATION ${SHARE_INSTALL_DIR}
)
install(FILES reactmicp.qsub
DESTINATION ${SHARE_INSTALL_DIR}
)
# Doxygen documentation
# ---------------------
add_subdirectory( doc )
# the cmake find module
# ---------------------
install(FILES cmake/FindSpecMiCP.cmake
DESTINATION ${SHARE_INSTALL_DIR}/cmake
)
# The following modules have their own CMakeLists.txt
# Python interface
#########################################################################
if (SPECMICP_BUILD_CYTHON)
add_subdirectory( cython )
endif()
# Tests
#########################################################################
add_subdirectory( tests )
# Examples
#########################################################################
add_subdirectory( examples )
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