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chemistry.hpp
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rSPECMICP SpecMiCP / ReactMiCP
chemistry.hpp
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/* =============================================================================
Copyright (c) 2014 - 2016
F. Georget <fabieng@princeton.edu> Princeton University
All rights reserved.
Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:
1. Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
3. Neither the name of the copyright holder nor the names of its
contributors may be used to endorse or promote products derived from this
software without specific prior written permission.
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. *
============================================================================= */
#ifndef SPECMICP_REACTMICP_EQUILIBRIUMCURVE_CHEMISTRY_HPP
#define SPECMICP_REACTMICP_EQUILIBRIUMCURVE_CHEMISTRY_HPP
#include "specmicp_common/types.hpp"
#include "specmicp/adimensional/equilibrium_curve.hpp"
#include "specmicp_common/physics/units.hpp"
namespace specmicp {
namespace reactmicp {
namespace eqcurve {
class SPECMICP_DLL_PUBLIC EquilibriumCurveSpeciation:
public EquilibriumCurve,
public units::UnitBaseClass
{
public:
EquilibriumCurveSpeciation(
RawDatabasePtr thedatabase,
AdimensionalSystemConstraints constraints,
index_t id_component,
AdimensionalSystemSolverOptions options
):
EquilibriumCurve(thedatabase, constraints),
UnitBaseClass(options.units_set),
m_data(thedatabase),
m_idc(id_component)
{
solver_options() = options;
}
void output();
void update_problem();
Matrix get_equilibrium_curve(scalar_t end_total_concentration, scalar_t delta);
Vector get_perturbation();
void error_handling(std::string msg) const;
private:
RawDatabasePtr m_data;
index_t m_idc;
Matrix m_eqcurve;
index_t m_cnt;
scalar_t m_delta;
};
} // end namespace eqcurve
} // end namespace reactmicp
} // end namespace specmicp
#endif // SPECMICP_REACTMICP_EQUILIBRIUMCURVE_CHEMISTRY_HPP
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