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specmicp/src/reactmicp/CMakeLists.txt
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CMakeLists.txt
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# ReactMiCP
# =============
set(REACTMICP_SOLVER_DIR solver)
set(REACTMICP_SYSTEMS_DIR systems)
set(REACTMICP_EQUILIBRIUMCURVE equilibrium_curve)
set(REACTMICP_IO io)
add_custom_target(reactmicp_incl SOURCES
${REACTMICP_SOLVER_DIR}/reactive_transport_solver_structs.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/variables_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/transport_stagger_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/chemistry_stagger_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/upscaling_stagger_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/stagger_structs.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/decl.inl
${REACTMICP_SOLVER_DIR}/staggers_base/staggers_base.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/variablesfwd.hpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/types_fwd.hpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/variables_sub.hpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/variables_box.hpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/transport_constraints.hpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/fv_1dof_equation.hpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/fv_1dof_equation.inl
)
set(REACTMICP_LIBFILES
${REACTMICP_EQUILIBRIUMCURVE}/chemistry.cpp
${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_extractor.cpp
${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_coupler.cpp
${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_solid_transport.cpp
# Flexible reactive transport solver
# ----------------------------------
${REACTMICP_SOLVER_DIR}/reactive_transport_solver.cpp
${REACTMICP_SOLVER_DIR}/timestepper.cpp
${REACTMICP_SOLVER_DIR}/runner.cpp
#
${REACTMICP_SYSTEMS_DIR}/saturated_react/variables.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_program.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_stagger.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/equilibrium_stagger.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/kinetic_stagger.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/react_solver.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/init_variables.cpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/diffusive_upscaling_stagger.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/variables.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/saturation_equation.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/saturation_pressure_equation.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/pressure_equation.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/aqueous_equation.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/aqueous_pressure_equation.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/transport_stagger.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/equilibrium_stagger.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/variables_interface.cpp
${REACTMICP_SYSTEMS_DIR}/unsaturated/equilibrium_constraints.cpp
${REACTMICP_IO}/reactive_transport.cpp
${REACTMICP_IO}/saturated_react.cpp
${REACTMICP_IO}/configuration.cpp
)
# hdf5
# -----
if (HDF5_FOUND)
list(APPEND REACTMICP_LIBFILES ${REACTMICP_IO}/hdf5_unsaturated.cpp)
include_directories(${HDF5_INCLUDE_DIRS})
set_source_files_properties(
${REACTMICP_IO}/hdf5_unsaturated.cpp
PROPERTIES COMPILE_DEFINITIONS HDF5_DEFINITIONS
)
endif()
set_visibility_flag(${REACTMICP_LIBFILES})
set_pgo_flag(${REACTMICP_LIBFILES})
if(OPENMP_FOUND)
if(SPECMICP_USE_OPENMP)
set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/saturated_react/equilibrium_stagger.cpp
PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
)
set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/saturated_react/kinetic_stagger.cpp
PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
)
set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/unsaturated/transport_stagger.cpp
PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
)
set_source_files_properties(${REACTMICP_SYSTEMS_DIR}/unsaturated/equilibrium_stagger.cpp
PROPERTIES COMPILE_DEFINITIONS "SPECMICP_USE_OPENMP"
)
endif()
endif()
add_library(objreactmicp OBJECT ${REACTMICP_LIBFILES})
set_property(TARGET objreactmicp PROPERTY POSITION_INDEPENDENT_CODE 1)
add_library(reactmicp SHARED $<TARGET_OBJECTS:objreactmicp>)
target_link_libraries(reactmicp dfpm)
install(TARGETS reactmicp
LIBRARY DESTINATION ${LIBRARY_INSTALL_DIR}
)
# include files
# -------------
set(REACTMICP_STAGGERBASE_INCLUDE_LIST
${REACTMICP_SOLVER_DIR}/staggers_base/variables_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/transport_stagger_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/chemistry_stagger_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/upscaling_stagger_base.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/stagger_structs.hpp
${REACTMICP_SOLVER_DIR}/staggers_base/decl.inl
${REACTMICP_SOLVER_DIR}/staggers_base/staggers_base.hpp
)
set(REACTMICP_SOLVER_INCLUDE_LIST
${REACTMICP_SOLVER_DIR}/reactive_transport_solver_structs.hpp
${REACTMICP_SOLVER_DIR}/reactive_transport_solver.hpp
${REACTMICP_SOLVER_DIR}/timestepper.hpp
${REACTMICP_SOLVER_DIR}/runner.hpp
)
set(REACTMICP_SATURATEDREACT_INCLUDE_LIST
${REACTMICP_SYSTEMS_DIR}/saturated_react/variablesfwd.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/variables.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_program.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/transport_stagger.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/equilibrium_stagger.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/kinetic_stagger.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/react_solver.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/init_variables.hpp
${REACTMICP_SYSTEMS_DIR}/saturated_react/diffusive_upscaling_stagger.hpp
)
set(REACTMICP_EQUILIBRIUMCURVE_INCLUDE_LIST
${REACTMICP_EQUILIBRIUMCURVE}/chemistry.cpp
${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_extractor.cpp
${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_coupler.cpp
${REACTMICP_EQUILIBRIUMCURVE}/eqcurve_solid_transport.cpp
)
set(REACTMICP_IO_INCLUDE_LIST
io/reactive_transport.hpp
io/saturated_react.hpp
io/configuration.hpp
)
install(FILES ${REACTMICP_STAGGERBASE_INCLUDE_LIST}
DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/solver/staggers_base
)
install(FILES ${REACTMICP_SOLVER_INCLUDE_LIST}
DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/solver
)
install(FILES ${REACTMICP_SATURATEDREACT_INCLUDE_LIST}
DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/systems/saturated_react
)
install(FILES ${REACTMICP_EQUILIBRIUMCURVE_INCLUDE_LIST}
DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/equilibrium_curve
)
install(FILES ${REACTMICP_IO_INCLUDE_LIST}
DESTINATION ${INCLUDE_INSTALL_DIR}/reactmicp/io
)
# static libraries
# ----------------
if(SPECMICP_BUILD_STATIC)
add_library(reactmicp_static STATIC $<TARGET_OBJECTS:objreactmicp>)
install(TARGETS reactmicp_static
ARCHIVE DESTINATION ${STATIC_LIBRARY_INSTALL_DIR}
)
else()
add_library(reactmicp_static EXCLUDE_FROM_ALL STATIC $<TARGET_OBJECTS:objreactmicp>)
endif()
set_target_properties(reactmicp_static PROPERTIES OUTPUT_NAME reactmicp)
target_link_libraries(reactmicp_static dfpm_static)
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