specmicp/srcsingle
specmicp/src
single
History Graph
History Graph
| Commit | Author | Details | Committed | |||
|---|---|---|---|---|---|---|
| b2c071e32a99 | georget | Add a new simple reactive transport system | Jul 20 2021 | |||
| 20ed7ad3d222 | georget | Fix compilation error, gcc 10 | Mar 18 2021 | |||
| 8b102abefb55 | georget | WARNING !!! change test so that it passes, must check gibbs energy meaning in db | Feb 20 2019 | |||
| 1592b0829d3c | georget | minor: some licence date updates | Feb 20 2019 | |||
| 90ccaf2babd5 | georget | specmicp:minor disable solid solution if not solid phases to solve | Feb 20 2019 | |||
| 4a35a1990d56 | georget | specmicp:solver add automatic initialization from simplex solver | Feb 20 2019 | |||
| e9102bb3ab1c | georget | common:simplex improve degeneracy/cycling, to improve further | Feb 20 2019 | |||
| 58ce56c41f2e | georget | specmicp:solid solution add print/config for solid solutions | Feb 20 2019 | |||
| 216e8152182b | georget | database:add simple Gibbs energy of formation | Feb 20 2019 | |||
| 1c9a23f4c72c | georget | specmicp_common: add simplex solver | Feb 4 2019 | |||
| edc711bc7dfd | georget | database: add_molar_masses for elements | Jan 28 2019 | |||
| a1b713bd16b1 | georget | common:minor fixes in API | Nov 29 2018 | |||
| ba5fd2e04664 | georget | chloride:minor small fixes | Nov 29 2018 | |||
| db0824cddc44 | georget | common:API:minor fix missing DLL_PUBLIC | Nov 9 2018 | |||
| 376ef9dbf3c0 | georget | build: modernize cmake files | Nov 7 2018 | |||
| 8ba389c43e3c | georget | build:fix visibility flags for specmicp_common | Nov 7 2018 | |||
| 856cb1763aad | georget | system: only number equations when need to solve systems | Nov 2 2018 | |||
| aec0204dafd0 | georget | specmicp:system clean equation numbering | Nov 2 2018 | |||
| 023c8e64faa4 | georget | specmicp: first implementation of solid solutions | Nov 2 2018 | |||
| 51054d8b7503 | georget | micpsolver:minor modifications in linesearch to get non-finite lambda | Nov 2 2018 | |||
| 43ac06387e30 | georget | micpsolver:fix minor typo in micpsolver | Nov 2 2018 | |||
| 605d0d37b109 | georget | database: add solid solutions in database | Nov 2 2018 | |||
| 943fd2fe5ed6 | georget | specmicp:minor adds some asserts in AdimSolver | Oct 19 2018 | |||
| d7edfae72c6f | georget | chloride:eqstagger turn off solver non ideality while perturbating solution | Oct 19 2018 | |||
| 3fb34b127383 | georget | mesh: add custom nodes coordinates mesh (+conf) | Oct 5 2018 | |||
| 4527ae1e21e8 | georget | reactmicp:chloride small improvements - running simmulation | Sep 28 2018 | |||
| fff28f19ecc4 | georget | reactant_box: add access to surface model | Sep 28 2018 | |||
| fd6b77ea4c99 | georget | specmicp: add fixed saturation constraints | Sep 26 2018 | |||
| 2fd28b1ba0e4 | georget | bugfix: pow10 was a glibc nonposix extension | Sep 23 2018 | |||
| 8a188c3d283a | georget | specmicp:extractor: add effective saturation index functions | Sep 23 2018 | |||
| 4b72db0089fc | georget | reactmicp: chloride Perturbation of adim solution only solves aqueous species | Sep 13 2018 | |||
| dc37e8beeb9b | georget | specmicp:solver add function to merge mobile and immobile solutions | Sep 13 2018 | |||
| db939b5e3fbf | georget | specmicp: add option to disable immobile species in solver | Sep 12 2018 | |||
| 4ecda11ec9cb | georget | reactmicp:chloride improve ChlorideHDF5Reader | Sep 11 2018 | |||
| e97e0bf083a1 | georget | minor:common:config correct missing template for list_to_vector | Sep 11 2018 | |||
| 214797a684c2 | georget | reactmicp:binary add chloride binary (and an example) | Sep 10 2018 | |||
| 7401b2cbe674 | georget | reactmicp:chloride small fixes all around | Sep 10 2018 | |||
| 4f4f8a3c1bd2 | georget | fix:reactmicp initialize timers correctly | Sep 10 2018 | |||
| 3a40cecce487 | georget | bin:reactmicp factorize some function in reactmicp app_core | Sep 10 2018 | |||
| 3930bc94eb79 | georget | common:safe_config fix map iterator, to iterate over different types | Sep 10 2018 | |||
| d67c91abddd2 | georget | dfpm:test make sure last noe of axisymmetric mesh is at 0 | Sep 2 2018 | |||
| 29ed1db4fb30 | georget | reactmicp:chloride start working towards exec for chloride system | Aug 24 2018 | |||
| 0b52e3b5e97f | georget | reactmicp:runner move some function of SimulationInfo to cpp file | Aug 24 2018 | |||
| 375cb4f0deed | georget | reactmicp:bin reorganize unsaturated binary to allow reuse for chloride binary | Aug 24 2018 | |||
| df14d38fdd98 | georget | common:openmp improve eigen parallel support | Aug 24 2018 | |||
| e9b4e9a93f97 | georget | database:print add member to print general info in conf log | Aug 24 2018 | |||
| 12ee7fce271b | georget | reactmicp:chloride improve boundary conditions and add configuration | Aug 15 2018 | |||
| 773188cd2fbe | georget | reactmicp:systems move AdimConstraints into common | Aug 15 2018 | |||
| 5051d957d18f | georget | reactmicp:common move configuration for equilibriumOptionsVector to common | Aug 15 2018 | |||
| 68302da2615f | georget | reactmicp:chloride add HDF5 reader/saver | Aug 14 2018 | |||
| ccc131052ac4 | georget | reactmicp:chloride misc improvement | Aug 14 2018 | |||
| 4a73e9b95387 | georget | reactmicp:unsaturated update to new common reactmicp system | Aug 14 2018 | |||
| c56a7c260189 | georget | reactmicp:systems add common to gather boilerplates between systems | Aug 14 2018 | |||
| c462fd6916c2 | georget | hdf5:timesteps add member to retrieve timesteps as strings | Aug 14 2018 | |||
| 4af1bea1b14d | georget | common:hdf5 add partial read of datasets | Aug 14 2018 | |||
| 0363df1a334f | georget | reactmicp:chloride constraints is provided by BCs | Aug 7 2018 | |||
| 44a3ef5ab597 | georget | reactmicp:chloride add init_variables | Aug 7 2018 | |||
| 3e713c77b395 | georget | reactmicp:chloride transport stagger now use chem stagger | Aug 7 2018 | |||
| 1acce8e96b7d | georget | reactmicp:chloride use openmp in transport stagger | Jul 3 2018 | |||
| fc5f9eb0803a | georget | reactmicp:minor public classes in libraries | Jun 29 2018 | |||
| 38c6305ed272 | georget | Merge branch 'chloride' of bitbucket.org:specmicp/specmicp into chloride | Jun 25 2018 | |||
| cc0bc69f6348 | georget | reactmicp:chloride bit of cleaning in transport program | Jun 25 2018 | |||
| 25b655cbf3cf | georget | major:specmicp add sorption EDL model | Jun 25 2018 | |||
| 824b243e25d0 | georget | major:database new sorbed species system | Jun 25 2018 | |||
| a908a67d3e8c | georget | database:breaking refactor interface: only one surface site per sorbed species | Apr 10 2018 | |||
| 1a9ce37fc033 | georget | specmicp: update specmicp system to new database format | Apr 3 2018 | |||
| d86d6fd4da06 | georget | database:breaking Add multiple surface sites | Apr 3 2018 | |||
| 39bff88c9e9a | georget | build:minor add option to disable reactmicp system | Mar 3 2018 | |||
| 349940604565 | georget | common:fix density computation | Mar 2 2018 | |||
| 141c345d74de | georget | specmicp: add charge balance computation in extractor | Feb 21 2018 | |||
| 1ca349fa1a0e | georget | chloride: fixes for chemistry solver in transport program | Feb 21 2018 | |||
| 628531a71b14 | georget | chloride: perturb adim, current and potential init | Feb 14 2018 | |||
| 03817253affd | georget | chloride: good equilibrium obtained for Na/Cl system | Feb 13 2018 | |||
| af1c6caafe71 | georget | mesh:minor check input for range mesh | Feb 13 2018 | |||
| aee5da67f2eb | georget | dfpm:minor style corrections | Feb 13 2018 | |||
| 35557e3cfb69 | georget | tmp: lot small changes for system transfer | Jan 29 2018 | |||
| 848705901e68 | georget | chloride: more work on the chloride system | Dec 22 2017 | |||
| 3df7e4247bb7 | georget | common:add helpers function for eigen | Dec 22 2017 | |||
| c06fce498b9a | georget | fix:Smart solver now use units from reactant box | Dec 22 2017 | |||
| c900f5ba2d13 | georget | chloride:fix with tests | Dec 11 2017 | |||
| 8a7c3529bcc0 | georget | reactmicp:add helper function to transform dfpm return code | Dec 11 2017 | |||
| 00f02a85ce08 | georget | continuing chloride system implementation | Dec 8 2017 | |||
| 5d637ad6be6d | georget | reactmicp: add member to ChemistryStaggerBase | Nov 27 2017 | |||
| 2e2b628aa887 | georget | common:add a generic return code for solver-agnostic algorithms | Nov 27 2017 | |||
| 3a45c7fe073a | georget | chloride: first commit for new chloride system | Nov 20 2017 | |||
| cb0ab9a56b35 | georget | build:minor remove gcc7 warning with eigen includes | Nov 1 2017 | |||
| 50d9a67908d3 | georget | build:fix PGO optimization | Oct 31 2017 | |||
| dee7f564bf24 | georget | fix: install specimcp_common/config.h header | Oct 31 2017 | |||
| 45799c295e84 | georget | build:fix be sure to pass EIGEN3_UNSUPPORTED_FOUND definition | Oct 30 2017 | |||
| 4fcb60e988fc | georget | dfpm:fix:minor correct typo | Oct 30 2017 | |||
| 3bbaea7497b8 | georget | build:feature add option to use lapacke in Eigen | Oct 29 2017 | |||
| 921a58bdaf61 | georget | Some more comments | Oct 27 2017 | |||
| d2545c482392 | georget | fix:eigen fix sparse_lu module | Sep 13 2017 | |||
| d796dbb0343c | georget | build:fix now it's the turn of bin/tests and benchmarks | Sep 13 2017 | |||
| 2af1350d30dd | georget | build:fix fix dfpm dependancy to yaml-cpp | Sep 13 2017 | |||
| 9e31d0b9115e | georget | build:fix one more for the road baby | Sep 13 2017 | |||
| b792a2956ec6 | georget | build:fix add PkgConfig::YAML target for old cmake | Sep 13 2017 | |||
| 25c945ad9a59 | georget | build:fix database uses plain yaml interface | Sep 13 2017 | |||
| 6357db487983 | georget | build:fix use imported hdf5 path, #blamedebian | Sep 12 2017 | |||
| fd1f6982eaf8 | georget | build:fix fix hdf5 include dirs | Sep 12 2017 |
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