Diffusion SpecMiCP / ReactMiCP (master) History

specmicp/src
master30a1dd687101973ffa3fe52…

Sep 21 2016

unsaturated: add residuals in post_residuals_impl
30a1dd687101
·georget on Sep 21 2016, 19:09.
minor: fix dfpm configuration print
395d9580f23b
·georget on Sep 21 2016, 19:04.

Sep 19 2016

specmicp: add mineral upper bound in ReactantBox
166fda7bb141
·georget on Sep 19 2016, 03:39.

Sep 18 2016

micpsolver: clean BoxVI code
f451f96e739a
·georget on Sep 18 2016, 16:17.
specmicp solver : add upper bound on minerals
4837d2ea3d06
·georget on Sep 18 2016, 04:18.
micpsolver : add box constrained VI solver
b33545f17075
·georget on Sep 18 2016, 04:14.

Aug 30 2016

specmicp: add configuration for fixed saturation equation
97deef116070
·georget on Aug 30 2016, 19:34.
specmicp: Add a fixed saturation equation
5821dfca248c
·georget on Aug 30 2016, 17:05.

Aug 3 2016

minor:fix:reactmicp clean whitespaces is iter output
357c78b974d0
·georget on Aug 3 2016, 17:18.

Jul 29 2016

specmicp Vectorise debye-huckel computation
b65fcb5110b5
·georget on Jul 29 2016, 21:53.

Jul 22 2016

fix: add missing compilation headers
e9389b3fb332
·georget on Jul 22 2016, 16:05.

Jul 20 2016

add:dpfm configure/check pivots threshold
949704b848f1
·georget on Jul 20 2016, 17:53.
add:sparse_solver pivots checking in QR solver
41d623add9a4
·georget on Jul 20 2016, 17:30.

Jun 29 2016

add:specmicp functor to set update in StepProblem
2c714e5b1af0
·georget on Jun 29 2016, 17:12.
add:specmicp StepSolver
1933e8b52009
·georget on Jun 29 2016, 15:28.
fix:specmicp Initialization of SmartAdimSolver
dc54b321598d
·georget on Jun 29 2016, 15:26.

Jun 24 2016

specmip initialization of smart solver in conf
ae4f87a36ca0
·georget on Jun 24 2016, 20:50.
impr:reactmicp:unsaturated Transport stagger conf
c6cff64fe196
·georget on Jun 24 2016, 16:47.

Jun 21 2016

fix:reactmicp:unsaturated check residuals_0
af90341cb097
·georget on Jun 21 2016, 17:21.
fix:reactmicp:unsaturated computation of aqueous transport residuals
2de6635023a7
·georget on Jun 21 2016, 17:19.
reactmicp:unsaturated fix firsts residual in transport
a827fdd5b2b3
·georget on Jun 21 2016, 17:11.
add:dfpm A special method to compute the initial residual can be set
1e654b420708
·georget on Jun 21 2016, 17:09.
add:reactmicp:hdf5: the unsaturated reader can return the mesh
ac46e0a5bfda
·georget on Jun 21 2016, 17:07.

Jun 3 2016

add:reactmicp:unsaturated Inert volume fraction
a1d31955868e
·georget on Jun 3 2016, 21:13.
add:reactmicp Transfer clock time
926e75cd0a71
·georget on Jun 3 2016, 20:07.
Add:rectmicp:unsaturated Implicit gas flux
1ba90898b04a
·georget on Jun 3 2016, 19:24.
minor:bin:reactmicp print dfpm conf for gas
5b27dfbd6dec
·georget on Jun 3 2016, 05:13.
Add:dfpm save jacobian if it can't be decomposed
b0ebbfcf56f3
·georget on Jun 3 2016, 05:11.
fix:reactmicp Charge keeper in ReactantBox
e351e2efe52f
·georget on Jun 3 2016, 05:06.

May 27 2016

fix:out more descriptive log messages
821379fc98d7
·georget on May 27 2016, 15:11.
fix:reactmicp: typo in gas equation configuration
ad53bd7bcbfd
·georget on May 27 2016, 15:09.
fix:unsaturated modify precision of jacobian
28297954ab81
·georget on May 27 2016, 15:05.

May 25 2016

fix:specmicp add charge keeper as component
cd2af1e75648
·georget on May 25 2016, 03:36.
fix:reactmicp:unsaturated check before set
4d7034361c24
·georget on May 25 2016, 03:34.
fix:specmicp add move constructor to extractor
afa831028047
·georget on May 25 2016, 03:33.
add:laws: Van Genutchen capillary pressure model
da23927dfb20
·georget on May 25 2016, 03:23.
fix: towards 0 warning with Clang
8e2ae07751c4
·georget on May 25 2016, 03:21.
fix:build: explicit link of database to yaml-cpp
802535447142
·georget on May 25 2016, 03:13.

May 22 2016

fix: compilation free warning !
c1ba3920479b
·georget on May 22 2016, 22:51.
fix:dfpm remove dead code
b51cc4546096
·georget on May 22 2016, 22:25.
specmicp: remove deprecated methods (AdimExtractor)
d9d18912c2b4
·georget on May 22 2016, 22:20.
dfpm: remove deprecated configuration interface
439b4e78d9e7
·georget on May 22 2016, 22:20.
database: remove deprecated functions
16e082acd0d4
·georget on May 22 2016, 21:51.
units: remove old configuration interface
dc7c72b24e3b
·georget on May 22 2016, 21:51.
specmicp: remove old configuration interface
4e6ffc91d0dc
·georget on May 22 2016, 21:50.
specmicp binary use new YAML interface
b1aa7b422b2b
·georget on May 22 2016, 17:57.
fix:specmicp:configuration fix typo in configuration reading !
c5c5cb9eabcf
·georget on May 22 2016, 17:56.
specmicp: update default starting guess
18558bda9f4f
·georget on May 22 2016, 17:44.

May 15 2016

build: allow compilation with c++14
d624753fa276
·georget on May 15 2016, 19:57.
fix:reactmicp Remove unnecessary visibility directives
95882d9768cd
·georget on May 15 2016, 17:42.
impr:database set unknow_class as a database module
84b0a3f89ae4
·georget on May 15 2016, 17:28.

May 14 2016

fix:filesystem find_path : check path first
070e844d79c4
·georget on May 14 2016, 21:36.
add:mesh read/save mesh in hdf5 file
024def84ee79
·georget on May 14 2016, 21:01.
impr:eigen pass const vector& as const Ref<const vector>&
75a9e7c82fe8
·georget on May 14 2016, 20:59.
feat:dfpm:mesh Refactoring of mesh module (same interface)
fb9249c52241
·georget on May 14 2016, 15:18.

May 6 2016

fix:solver fix commit 46ff29c and tests
73b62312473f
·georget on May 6 2016, 21:40.
api:specmicp:solver clean adimensional solver
a07f579e9946
·georget on May 6 2016, 21:19.

May 5 2016

reactant_box: add volume fraction parsing
e9ed76a21257
·georget on May 5 2016, 16:47.
units: add volume fraction as a amount unit
418c24ad2b1f
·georget on May 5 2016, 16:44.

May 3 2016

impr:specmicp allow retrieving solution in unsafe mode
f96bf7686096
·georget on May 3 2016, 22:25.
feat:specmicp:configuration add ReactBox configuration
a49b2019a703
·georget on May 3 2016, 22:24.
fix:specmicp Add move operator for ReactantBox
315d79756ea6
·georget on May 3 2016, 20:42.
minor:database add 'move' operations for DatabaseHolder
9283170dfee0
·georget on May 3 2016, 20:41.
impr:pimpl add move operations
2c0e057f4f6e
·georget on May 3 2016, 20:40.

May 2 2016

impr:specmicp enable user initialisation of SmartSolver
c953abeef04a
·georget on May 2 2016, 21:35.
grammar:specmicp Rename initialise_ to initialize_
8a7b57ade258
·georget on May 2 2016, 21:27.

Apr 28 2016

minor:build remove useless buggy code
776561ec331b
·georget on Apr 28 2016, 19:35.
minor:database remove deadcode generating warning
9a6a430bc2ff
·georget on Apr 28 2016, 19:31.
minor:commoin:io comments in units configuration functions
cc675a657a2e
·georget on Apr 28 2016, 19:28.

Apr 23 2016

impr:common:hdf5 Add read string dataset
c0101e219de9
·georget on Apr 23 2016, 20:53.

Apr 19 2016

minor:reactmicp:unsaturated cleanup transport stagger
0e6eede28aa4
·georget on Apr 19 2016, 22:31.
impr:dfpm:io print functions are in their own module
213a1c2ddeb9
·georget on Apr 19 2016, 21:18.
minorfix:dfpm correct typo in name
c091ca6ed676
·georget on Apr 19 2016, 20:23.
fix:reactmicp:unsaturated fix options getters in transport staggers
acc7f102c526
·georget on Apr 19 2016, 18:07.
fix:micpsolver fix condition number estimates test
8ed4d0d2bd57
·georget on Apr 19 2016, 15:59.
fix various bugs found with asan/ubsan
d5e810125277
·georget on Apr 19 2016, 03:15.

Apr 13 2016

fix:common:log separate implementation/export part of log header
5248f11553a2
·georget on Apr 13 2016, 19:25.

Apr 11 2016

upd:eigen fix for eigen3.3 compatibility
28db9f5617e8
·georget on Apr 11 2016, 20:39.

Apr 10 2016

fix:headers remove inclusion of old HDF5 header
70876358221d
·georget on Apr 10 2016, 21:33.
impr:build Create FindEigen3Unsupported module for eigen3/Unsupported
e16dc3485596
·georget on Apr 10 2016, 18:25.

Apr 9 2016

fix:build fix hdf5 include directories
97dcff9fa40d
·georget on Apr 9 2016, 20:27.
del:io:hdf5 remove old hdf5 wrapper around CPP HDF5 API
975cd3433232
·georget on Apr 9 2016, 17:48.

Apr 7 2016

fix:dfpm:parabolic_solver check if jacobian was successful
3cdc4047b2b0
·georget on Apr 7 2016, 19:47.
fix:reactmicp:unsaturated:transport_stagger move dfpm solver initialization
8d7445331c34
·georget on Apr 7 2016, 17:56.
impr:reactmicp:solver print debug information if return code is good enough
6e88c9b19244
·georget on Apr 7 2016, 17:49.

Apr 6 2016

impr:reactmicp:unsaturated only compute residual 0 when initialisation is done
080906e9f926
·georget on Apr 6 2016, 22:45.
impr:reactmicp:unsaturated compute equilibrium for each node at the beginning…
5f8a1f17204f
·georget on Apr 6 2016, 19:20.
Compute the total concentration vector
e37f8beae96e
·georget on Apr 6 2016, 19:20.

Apr 4 2016

impr:specmicp:extractor add total_solid_mass_concentration getter function
8da77adabb31
·georget on Apr 4 2016, 18:02.

Apr 1 2016

impr:io:hdf5:timesteps add operator[] to get a timestep by position
98ba3a9d616f
·georget on Apr 1 2016, 19:33.
fix:build install specmicp/reactmicp main headers
d72d8bcb98a4
·georget on Apr 1 2016, 19:00.

Mar 31 2016

impr:specmicp:extractor compute total mass concentration
45661894a19a
·georget on Mar 31 2016, 02:35.
impr:reactmicp:unsaturated openmp directives -> change scheduling for solving…
abfc691f2c1d
·georget on Mar 31 2016, 02:35.
impr:reactmicp:unsaturated:io rewrited hdf5 saver/reader using new wrapper
3e0ab284bd47
·georget on Mar 31 2016, 02:35.
impr:database species can return the vector of labels, useful for IO
8f098384db8a
·georget on Mar 31 2016, 02:35.
upd:database:io:hdf5 update hdf5 output to new wrapper
55b54e9c16de
·georget on Mar 31 2016, 02:35.
upd:dfpm:io:hdf5 move hdf5 output to new wrapper
8618dbed70e1
·georget on Mar 31 2016, 02:35.
impr:io:hdf5 more wrapping around hdf5
4bb0e2c6c160
·georget on Mar 31 2016, 02:35.
fix:common:yaml_format higher precision for database output
ca73ab03cfed
·georget on Mar 31 2016, 01:59.

Mar 28 2016

upd:hdf5 Use the new hdf5 wrapper API in HDF5timesteps
7436518aa391
·georget on Mar 28 2016, 15:41.