Diffusion SpecMiCP / ReactMiCP (master) History

specmicp
master30a1dd687101973ffa3fe52…

Sep 19 2016

specmicp: add mineral upper bound in ReactantBox
166fda7bb141
·georget on Sep 19 2016, 03:39.

Sep 18 2016

specmicp solver : add upper bound on minerals
4837d2ea3d06
·georget on Sep 18 2016, 04:18.

Aug 30 2016

specmicp: add configuration for fixed saturation equation
97deef116070
·georget on Aug 30 2016, 19:34.
specmicp: Add a fixed saturation equation
5821dfca248c
·georget on Aug 30 2016, 17:05.

Jul 29 2016

specmicp Vectorise debye-huckel computation
b65fcb5110b5
·georget on Jul 29 2016, 21:53.

Jul 22 2016

fix: add missing compilation headers
e9389b3fb332
·georget on Jul 22 2016, 16:05.

Jun 29 2016

add:specmicp functor to set update in StepProblem
2c714e5b1af0
·georget on Jun 29 2016, 17:12.
add:specmicp StepSolver
1933e8b52009
·georget on Jun 29 2016, 15:28.
fix:specmicp Initialization of SmartAdimSolver
dc54b321598d
·georget on Jun 29 2016, 15:26.

Jun 24 2016

specmip initialization of smart solver in conf
ae4f87a36ca0
·georget on Jun 24 2016, 20:50.

Jun 3 2016

fix:reactmicp Charge keeper in ReactantBox
e351e2efe52f
·georget on Jun 3 2016, 05:06.

May 25 2016

fix:specmicp add charge keeper as component
cd2af1e75648
·georget on May 25 2016, 03:36.
fix:specmicp add move constructor to extractor
afa831028047
·georget on May 25 2016, 03:33.
fix: towards 0 warning with Clang
8e2ae07751c4
·georget on May 25 2016, 03:21.

May 22 2016

specmicp: remove deprecated methods (AdimExtractor)
d9d18912c2b4
·georget on May 22 2016, 22:20.
specmicp: remove old configuration interface
4e6ffc91d0dc
·georget on May 22 2016, 21:50.
fix:specmicp:configuration fix typo in configuration reading !
c5c5cb9eabcf
·georget on May 22 2016, 17:56.
specmicp: update default starting guess
18558bda9f4f
·georget on May 22 2016, 17:44.

May 15 2016

impr:database set unknow_class as a database module
84b0a3f89ae4
·georget on May 15 2016, 17:28.

May 6 2016

fix:solver fix commit 46ff29c and tests
73b62312473f
·georget on May 6 2016, 21:40.
api:specmicp:solver clean adimensional solver
a07f579e9946
·georget on May 6 2016, 21:19.

May 5 2016

reactant_box: add volume fraction parsing
e9ed76a21257
·georget on May 5 2016, 16:47.

May 3 2016

impr:specmicp allow retrieving solution in unsafe mode
f96bf7686096
·georget on May 3 2016, 22:25.
feat:specmicp:configuration add ReactBox configuration
a49b2019a703
·georget on May 3 2016, 22:24.
fix:specmicp Add move operator for ReactantBox
315d79756ea6
·georget on May 3 2016, 20:42.

May 2 2016

impr:specmicp enable user initialisation of SmartSolver
c953abeef04a
·georget on May 2 2016, 21:35.
grammar:specmicp Rename initialise_ to initialize_
8a7b57ade258
·georget on May 2 2016, 21:27.

Apr 28 2016

minor:build remove useless buggy code
776561ec331b
·georget on Apr 28 2016, 19:35.

Apr 19 2016

fix various bugs found with asan/ubsan
d5e810125277
·georget on Apr 19 2016, 03:15.

Apr 10 2016

fix:headers remove inclusion of old HDF5 header
70876358221d
·georget on Apr 10 2016, 21:33.

Apr 6 2016

Compute the total concentration vector
e37f8beae96e
·georget on Apr 6 2016, 19:20.

Apr 4 2016

impr:specmicp:extractor add total_solid_mass_concentration getter function
8da77adabb31
·georget on Apr 4 2016, 18:02.

Apr 1 2016

fix:build install specmicp/reactmicp main headers
d72d8bcb98a4
·georget on Apr 1 2016, 19:00.

Mar 31 2016

impr:specmicp:extractor compute total mass concentration
45661894a19a
·georget on Mar 31 2016, 02:35.

Mar 25 2016

upd:specmicp:hdf5 save adim solution using new hdf5 wrapper
37417552df4c
·georget on Mar 25 2016, 18:59.

Mar 18 2016

feat:specmicp Reactant box can now return a set of constraints
d94792a4f65f
·georget on Mar 18 2016, 22:42.
impr:specmicp:extractor add cache for unit conversions
20f010b038f7
·georget on Mar 18 2016, 19:30.

Mar 16 2016

fix:specmicp millimoles unit now works !
4412fddf1e1c
·georget on Mar 16 2016, 15:26.

Mar 14 2016

fix:specmicp:probelm_solver units, units, units
8097bf3fab7d
·georget on Mar 14 2016, 15:17.

Mar 13 2016

feat:specmicp ReactantBox : initial formulation with units
9149aa40938d
·georget on Mar 13 2016, 21:44.

Mar 11 2016

upd:units use new units system
446e84e51406
·georget on Mar 11 2016, 04:51.
upd:specmicp adim system used new moles unit
1ecc67c5bb68
·georget on Mar 11 2016, 00:50.

Feb 29 2016

feat:specmicp:workinprogress add a "smart solver" for specmicp
535d95297fcc
·georget on Feb 29 2016, 15:22.

Feb 26 2016

impr:specmicp:config add 'inert_volume_fraction' option in configuration
bf4a7246412a
·georget on Feb 26 2016, 17:17.
impr:specmicp only solve pressure model if we solve non ideality model
2c3c47ab3079
·georget on Feb 26 2016, 17:16.
impr:specmicp add options to specify restart water volume fraction
70236c20c4d2
·georget on Feb 26 2016, 16:43.

Feb 24 2016

impr:specmicp add configuration options for AdimSystem
79cec8e3b78b
·georget on Feb 24 2016, 15:19.

Feb 23 2016

impr:specmicp print configuration informations
f57080d65807
·georget on Feb 23 2016, 19:12.

Feb 11 2016

impr:config put all yaml sections/attributes definitions in one file
164da40b7b8e
·georget on Feb 11 2016, 21:52.

Feb 7 2016

impr:organization make specmicp use new orga of specmicp_{common,database}
98cba15aaf10
·georget on Feb 7 2016, 17:08.

Feb 5 2016

impr:specmicp move some config to the new safe config
efe398c85c39
·georget on Feb 5 2016, 19:44.

Feb 4 2016

impr:build compile specmicp objects only once
616cef12e935
·georget on Feb 4 2016, 15:26.
impr:specmicp configuration of specmicp constraints using the new YAML safe…
8704b153336b
·georget on Feb 4 2016, 15:25.

Jan 28 2016

impr:io specmicp options, add conservative configuration
bc5618abee40
·fabien on Jan 28 2016, 03:49.

Jan 23 2016

feat:configure units
aad63588f6c3
·fabien on Jan 23 2016, 17:34.

Jan 22 2016

hdf5:adim read adim solution from already open group
ff1bfe1dc0ac
·fabien on Jan 22 2016, 17:41.

Jan 19 2016

HDF5:specmicp read Adim solution from HDF5 file
b73cd1c1272b
·fabien on Jan 19 2016, 22:46.
APIChange:fix: adimensionnal solver -> pass raw shared_pointer
7b0242e05b16
·fabien on Jan 19 2016, 18:49.

Jan 3 2016

license: modify license to include year 2016
235eaf0b5b35
·fabien on Jan 3 2016, 00:04.

Dec 29 2015

impr:specmicp style in jacobian water AdimSystem
2d6d6d0be31b
·fabien on Dec 29 2015, 04:46.

Dec 19 2015

impr: fix compilation warning (gcc and clang)
61a1e89e1271
·fabien on Dec 19 2015, 21:11.

Dec 16 2015

doc: remove lots of warning in doc generation
9d4326f47013
·fabien on Dec 16 2015, 17:49.

Nov 25 2015

fix: fix hdf5 cmake include dirs/definitions, yes again...
f77af9a60aa4
·fabieng on Nov 25 2015, 05:24.
fix: fix include dir hdf5 (second)
82934be6a211
·fabien on Nov 25 2015, 04:26.
fix: correct include directories for HDF5
6c0ef321bcf9
·fabien on Nov 25 2015, 04:11.

Nov 15 2015

fix: export symbols of hdf5 functions
307c69a60f2b
·fabien on Nov 15 2015, 22:36.
fix: consistent API, name is before section in save_*() in HDF5 format
7d858caaf955
·fabien on Nov 15 2015, 21:43.
Fix : HDF5 : Hide implementation symbols
9f2a62399b3d
·fabien on Nov 15 2015, 21:43.
feat: save adimensional system solution in hdf5
28a4bc161e9f
·fabien on Nov 15 2015, 21:43.

Nov 11 2015

impr: AdimensionalExtractor can now return a copy of the solution
f0a961c3d86d
·fabien on Nov 11 2015, 21:54.

Sep 29 2015

refactor: separe residual water in 2 functions
8eea5f44bc3c
·fabien on Sep 29 2015, 18:08.
fix: re-compute gas scaling factor
bc2979556f46
·fabien on Sep 29 2015, 18:08.
refactor: rename saturation_ -> volume_fraction_ in AdimensionalSystem
fcd797321b23
·fabien on Sep 29 2015, 18:08.
refactor: remove AdimensionalSystem header inclusion in solver
4e562635f94b
·fabien on Sep 29 2015, 16:16.
fix: correct functions for volume fraction gas
4f8c2e8a5fc2
·fabien on Sep 29 2015, 16:16.
feature: add water pressure model in specmicp
4bb92b2d2b3f
·fabien on Sep 29 2015, 16:16.

Sep 26 2015

impr: padding in adimensional_system_solution
e1d44a9d9d81
·fabien on Sep 26 2015, 23:53.

Sep 14 2015

refactor: hide default options of AdimensinalSystemOptions
24ef8eadfa0f
·fabien on Sep 14 2015, 23:30.
refactor: adim default options are now in config_*.h file
f0fd4a5cd0ff
·fabien on Sep 14 2015, 23:04.
refactor: move configuration solution output in config_<> file
8f3676bf7899
·fabien on Sep 14 2015, 22:11.
output: add comment in solution files of SpecMiCP
3fe35fdcbd16
·fabien on Sep 14 2015, 21:55.

Sep 9 2015

fix: correct initialisation of variables in AdimensionalSolver
390c23c8aaee
·fabien on Sep 9 2015, 21:35.
fix: correct parsing of a fix fugacity constraint
e8d5bb01032b
·fabien on Sep 9 2015, 21:34.

Aug 11 2015

impr: abort solution parsing if metadata are not correct
db7f20a8c8a1
·fabien on Aug 11 2015, 20:55.
cosmetic: remove old code in comment
f75db11b41df
·fabien on Aug 11 2015, 20:54.

Jul 20 2015

fix: correct assertions in adimensional system numbering
1c251fa879ac
·fabien on Jul 20 2015, 23:00.

Jul 17 2015

fix: Correct saturation index sum
5d8f161fb9ba
·fabien on Jul 17 2015, 19:34.

Jul 13 2015

fix: modificator.set_minerals_kinetic
cee2d2898673
·fabien on Jul 13 2015, 20:56.

Jun 25 2015

Use the new format class info in output.
7d9e3901a22c
·fabien on Jun 25 2015, 19:24.

Jun 22 2015

Modify signature of AdimensionalSystemSolver constructors
1212aabdfff4
·fabien on Jun 22 2015, 20:58.
Remove print statement
84f2ee511d2e
·fabien on Jun 22 2015, 20:55.
Add a function to print the constraints
0a4a5f442443
·fabien on Jun 22 2015, 20:30.
Fix bug in SpecMiCP configuration
a01084ae1afa
·fabien on Jun 22 2015, 20:26.

Jun 19 2015

Do not remove H[+]/HO[-] when dissolving system
28fbffc41fa8
·fabien on Jun 19 2015, 23:06.

Jun 10 2015

Correct includes in io files
7fee7928fda3
·fabien on Jun 10 2015, 16:21.
Fix, minor improvements in SpecMiCP module
1d81493e610c
·fabien on Jun 10 2015, 16:20.

Jun 9 2015

Documentation
f9d6ee556023
·fabien on Jun 9 2015, 14:44.
Move AdimensionalSystemSolverSaver to YAML formatting
f28c1c458a8b
·fabien on Jun 9 2015, 05:53.

Jun 8 2015

Update configurations to use the new updates in YAML module
35f1ce4a8720
·fabien on Jun 8 2015, 19:44.

Jun 5 2015

Add more constraints configuration
e809292d7440
·branch: configuration
·fabien on Jun 5 2015, 16:47.

specmicp/src/specmicpmaster30a1dd687101973ffa3fe52…

Sep 19 2016

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specmicp/src/specmicp
master30a1dd687101973ffa3fe52…