Diffusion tamaas (master) History

History
master0049a94bd5afe717c711a39…

May 30 2022

added API to IntegralOperator to convert into scipy's LinearOperator
0049a94bd5af
·frerot on May 30 2022, 13:38.

May 23 2022

updated CHANGELOG
a629e57f02ba
·frerot on May 23 2022, 15:52.
temporary fix for https://github.com/pypa/pip/issues/7953
2ffd909500cc
·frerot on May 23 2022, 14:33.
converted setup.py.in to setup.cfg.in
3c1f495bddb8
·frerot on May 23 2022, 13:50.

May 18 2022

updating emails in AUTHORS files
2fbc8bbff82f
·frerot on May 18 2022, 10:01.
quoting citations in README
0bc84502f1cd
·frerot on May 18 2022, 09:45.

May 16 2022

KatoSaturated: registering + changing sign of plastic correction
387b2079c8ec
·frerot on May 16 2022, 12:10.
setting default visibility to hidden for wheels
a95bae08f7a0
·frerot on May 16 2022, 10:49.

May 13 2022

increasing tolerance for newton-krylov solver
540f525efedc
·frerot on May 13 2022, 15:25.

May 12 2022

added dump of surface fields in VTK files
7b5ec4cc38d8
·frerot on May 12 2022, 15:29.
fixed decorator ordering
38eb11899a50
·frerot on May 12 2022, 13:32.

May 11 2022

added netcdf to paraview file conversion
a8986393d27a
·frerot on May 11 2022, 14:06.
added @classmethod for read functions in dumpers
24351fe95e2b
·frerot on May 11 2022, 14:02.

May 10 2022

updated changelog
6508dd2474cb
·frerot on May 10 2022, 09:14.

May 9 2022

flake8 formating
93fa1380f6bd
·frerot on May 9 2022, 12:49.

May 6 2022

correctly handling dump mpi compatibility
d19c6d819ecd
·frerot on May 6 2022, 17:32.
added test for publications
6c36659917ba
·frerot on May 6 2022, 10:39.
using local and global variables for publications
94fe16d9801f
·frerot on May 6 2022, 10:39.
added emojis to readme
3c46870d9e1a
·frerot on May 6 2022, 10:16.
refreshed README
0eb41bf3cc68
·frerot on May 6 2022, 09:32.

May 5 2022

handling test when nc-config is missing
b6681ec70d25
·frerot on May 5 2022, 14:44.
added tests for netcdf mpi IO
2eedc50cbe2c
·frerot on May 5 2022, 13:53.
fixed test error when uvw not installed
5a6df2de8725
·frerot on May 5 2022, 11:04.
correctly setting PYTHONPATH for scons test
f5cabe2f7b85
·frerot on May 5 2022, 11:04.

May 2 2022

ensuring consistent compiler flags in configure
c41c37254b85
·frerot on May 2 2022, 18:01.
added __all__ definition in utils.py
41d64abe7e11
·frerot on May 2 2022, 13:23.

Apr 27 2022

added CITATION.cff
18ccd214e887
·frerot on Apr 27 2022, 13:43.

Apr 25 2022

adding Tamaas information to dump files
1825edb7098a
·frerot on Apr 25 2022, 14:09.

Apr 22 2022

logging last iteration in contact solvers
1ff450e7eb80
·frerot on Apr 22 2022, 16:38.
added functional accessor for contact solvers
02dde1d5fb78
·frerot on Apr 22 2022, 16:37.

Apr 14 2022

[doc] added mentions of NetCDFDumper with MPI
aa6cca2b4d5f
·frerot on Apr 14 2022, 17:10.
NetCDFDumper can now dump in MPI
fdd25350ee5b
·frerot on Apr 14 2022, 15:23.
defining boundary field predicate in C++
808f4ef5312b
·frerot on Apr 14 2022, 15:18.

Apr 13 2022

building wheels for CPython 3.10
9f4af773627d
·frerot on Apr 13 2022, 16:59.
[doc] using python 3.9 in RTD
161c4a472b3a
·frerot on Apr 13 2022, 16:59.
[doc] added inkscape for better svg renders
065559880bba
·frerot on Apr 13 2022, 16:51.
[doc] not setting python.version for RTD
a554b1529b91
·frerot on Apr 13 2022, 16:43.
[doc] adjusting RTD config
9e7bd7be633a
·frerot on Apr 13 2022, 16:39.
[doc] specified tools.python for RTD
35573d1ad029
·frerot on Apr 13 2022, 16:37.
[doc] setting RTD image to ubuntu 20.04
155db27422cb
·frerot on Apr 13 2022, 16:15.
[doc] using system imagemagick in RTD
7b96a49f1c3e
·frerot on Apr 13 2022, 15:53.
[doc] added some documentation on how to use MPI
c3fd65b80bf5
·frerot on Apr 13 2022, 15:03.
better render of scaling plot in doc
9e8d3742735c
·frerot on Apr 13 2022, 13:55.
added python3-h5py-mpi to Docker image
6973f0ebe85c
·frerot on Apr 13 2022, 11:21.

Apr 7 2022

installing imagemagick in ReadTheDocs
4278fed63fde
·frerot on Apr 7 2022, 16:38.
Merge branch 'master' of gitlab.com:tamaas/tamaas
95e0fd5ce8a9
·frerot on Apr 7 2022, 10:17.
added python constructor for Model
f9607922e458
·frerot on Apr 7 2022, 10:03.

Apr 6 2022

defining return types for scatter and gather
d66fc61e74f0
·Lucas Frérot on Apr 6 2022, 22:54.
fixed return policy for scatter and gather bindings
68395442fa89
·frerot on Apr 6 2022, 18:35.
Merge branch 'features/distribute' into 'master'
c99a4cb9feb3
·Lucas Frérot on Apr 6 2022, 17:58.
added tamaas.mpi.scatter and tamaas.mpi.gather
f6c88495cce5
·frerot on Apr 6 2022, 17:22.

Apr 5 2022

added tamaas.utils.publications to print relevant publications
3901c186d1d1
·frerot on Apr 5 2022, 13:43.
fixing warnings in examples
9a13073aadb7
·frerot on Apr 5 2022, 13:31.

Mar 22 2022

removed stray print in zenodo.py
1ec57adb4a77
·frerot on Mar 22 2022, 11:06.
updated changelog with version 2.4.0
9a0b47c737c0
·tag: v2.4.0
·frerot on Mar 22 2022, 10:19.
[ci] using debian stable image for zenodo step
071fecd8cb41
·tag: v2.4.0rc1
·frerot on Mar 22 2022, 09:44.

Mar 21 2022

[ci] added stage to draft new zenodo release
3967641eb149
·tag: v2.3.2rc1
·frerot on Mar 21 2022, 16:44.
deleting old files in zenodo draft
3ac1070eb4fc
·frerot on Mar 21 2022, 16:12.
added zenodo script to create new zenodo releases
0d26241b3a23
·frerot on Mar 21 2022, 16:02.
can execute INFOS.py to get version
9c468c5ff329
·frerot on Mar 21 2022, 16:01.
setting strip_info=True by default
67c3aba76431
·frerot on Mar 21 2022, 11:55.
added a read_sequence method to read data frames
932a5e9b9558
·frerot on Mar 21 2022, 11:55.

Mar 17 2022

prioritizing system packages instead of vendored dependencies
d3bb19ec4c8d
·frerot on Mar 17 2022, 10:09.
uniformized behavior of PYBIND11_ROOT compared to *_ROOT variables
e0d715877c62
·frerot on Mar 17 2022, 10:08.
added funding sources to README
6c782a463c64
·frerot on Mar 17 2022, 09:37.

Mar 16 2022

[ci] correct path for pybind11 headers in manylinux image
86dc241245c5
·frerot on Mar 16 2022, 17:30.
[ci] including vendored dependencies in ci images
4136befc50e4
·frerot on Mar 16 2022, 17:17.
refreshed dumpers private API
00e5015563d2
·frerot on Mar 16 2022, 13:38.

Mar 10 2022

linting
2dc673a45540
·frerot on Mar 10 2022, 18:30.
added generator of surfaces from a sequence of seeds
8b1f18b91b90
·frerot on Mar 10 2022, 10:54.
warning when setting generator seed < 1
f81b266df32a
·frerot on Mar 10 2022, 10:53.

Mar 7 2022

[doc] typo in README
694fe99a4656
·frerot on Mar 7 2022, 17:31.
[doc] silencing all remaining breathe warnings
6ee388e0b92d
·frerot on Mar 7 2022, 16:29.
[doc] silencing sphinx warnings about duplicate targets for links
0ed5bb2c991e
·frerot on Mar 7 2022, 15:31.
[doc] cleaned up API auto documentation
d4e72444f397
·frerot on Mar 7 2022, 11:14.
[doc] silencing a lot of breathe warnings
872ffdeaa9da
·frerot on Mar 7 2022, 11:00.

Mar 3 2022

simplified member functions in nonlinear_solvers
161d5979b7fc
·frerot on Mar 3 2022, 17:45.
added deep-copy functionality for Model objects
a32fd3ed3a84
·frerot on Mar 3 2022, 12:40.

Mar 2 2022

[doc] added documentation for utils module
94d9ff2f1a64
·frerot on Mar 2 2022, 15:54.

Mar 1 2022

linting
abda169fde82
·frerot on Mar 1 2022, 15:27.
added a from_voigt compute function
b3d7958eb0de
·frerot on Mar 1 2022, 15:11.
added tamaas.utils which contains some QOL functions
6885f6dd2d1e
·frerot on Mar 1 2022, 15:10.
[doc] docstrings in __main__.py
4ba31ed94a65
·frerot on Mar 1 2022, 14:41.

Jan 19 2022

updated email
e960a422ffd5
·frerot on Jan 19 2022, 14:20.

Jan 4 2022

updated copyright
2b24d9d43e38
·frerot on Jan 4 2022, 10:40.

Dec 23 2021

correcting some type conversion warnings
5c5c408a3174
·frerot on Dec 23 2021, 23:32.

Dec 18 2021

corrections from clang-tidy
f8c5f763f07f
·frerot on Dec 18 2021, 19:11.

Dec 15 2021

added -pthread flag to test linking
c80f58ccea73
·frerot on Dec 15 2021, 21:51.

Nov 25 2021

[doc] adding favicon
1e3b8f290cfc
·frerot on Nov 25 2021, 18:06.

Nov 23 2021

regenerating tamaas_info.cpp on changes in version
2928a8bfb65a
·frerot on Nov 23 2021, 12:06.
fixed issue with scons -c
7978874b3c1c
·frerot on Nov 23 2021, 12:06.

Nov 17 2021

ignoring modules in ~/.local in the Docker/Singularty container
0cb8ab8fb1e8
·frerot on Nov 17 2021, 13:09.

Nov 8 2021

[ci] skip wheels upload if they already exist
97462bc30403
·frerot on Nov 8 2021, 13:19.
Updated CHANGELOG
828c431ef723
·tag: v2.3.1
·frerot on Nov 8 2021, 11:50.

Nov 5 2021

Merge branch 'master' of gitlab.com:tamaas/tamaas
8e89eecca012
·frerot on Nov 5 2021, 09:25.
[ci] using the "latest" tag with master branch
d3950259266b
·frerot on Nov 5 2021, 09:24.

Nov 4 2021

added libopenmpi-dev as explicit dependency in Dockerfile
2236186706e8
·frerot on Nov 4 2021, 20:18.
[doc] added documentation for gitlab docker image
dc3cebc28fba
·frerot on Nov 4 2021, 18:13.
[ci] activating MPI for deployed docker images
2397fd6b5995
·frerot on Nov 4 2021, 18:12.
[ci] added generation of docker images in CI
024f08900431
·frerot on Nov 4 2021, 17:08.

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History
master0049a94bd5afe717c711a39…