deltaNotchCell.hpp
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deltaNotchCell.hpp
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			#ifndef __DELTANOTCHCELL_HPP__
			#define __DELTANOTCHCELL_HPP__
			//#include <boost/numeric/odeint.hpp>
			#include "cellInteraction.hpp"


			class DeltaNotchCell : public CellInteraction{

			protected:
			double gd; // delta degradation
			double gn; //notch degradation
			double a; //diffusion length scale
			double dprod; //max delta production
			double hfdp; //Hill factor for delta production

			public:
			DeltaNotchCell():CellInteraction(){ setDefaultParameters();}
			virtual ~DeltaNotchCell(){}
			virtual void setDefaultParameters(){
			gd = 0.1;
			gn = 0.1;
			a = 0.1; //diffusion length scale
			dprod = 3;
			hfdp = 3;
			}
			void operator() (const state_type &y , state_type &dydt , const double t);
			virtual void initState(double *s);
			virtual double notchProduction(double delta){double d2=delta*delta;return d2/(10000+d2);}
			virtual double getDeltaProduction(double si){return dprod/(1+pow(si,hfdp));}

			virtual uint cellStateDim(){return 2;}

			static void initCellState(Cell ce, void pt);
			static void setCellIndex(Cell ce, void pt);
			};


			#endif