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polarSignaling.hpp
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Created
Sun, Oct 13, 01:14
Size
1 KB
Mime Type
text/x-c++
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Tue, Oct 15, 01:14 (2 d)
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blob
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21608394
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R9411 tisue modeling
polarSignaling.hpp
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#ifndef __POLAR_SIGNALING_HPP__
#define __POLAR_SIGNALING_HPP__
#include "cellInteraction.hpp"
class
PolarSignaling
:
public
CellInteraction
{
protected
:
std
::
vector
<
double
>
m_polarity
;
//polarity signal at each boundary
std
::
vector
<
Vec2
>
m_cellPolarity
;
// polarity vector for each cell
double
tau_pol
;
public
:
PolarSignaling
();
virtual
void
operator
()
(
const
state_type
&
y
,
state_type
&
dydt
,
double
t
);
float
getWeight
(
Boundary
*
b
);
void
initState
(
double
*
signal
);
void
initState
(
state_type
&
state
,
double
*
signal
);
virtual
void
setDefaultParameters
(){
dead_cell_val
=
0.0
;}
virtual
void
initState
(
state_type
&
s
);
virtual
uint
boundaryStateDim
()
const
{
return
1
;}
virtual
void
setLattice
(
Lattice
*
lat
){
lattice
=
lat
;
m_polarity
.
resize
(
lat
->
getNbBoundaries
());
m_cellPolarity
.
resize
(
lat
->
getNbCells
());}
virtual
void
initBoundary
(
Boundary
*
bo
,
state_type
*
state
);
virtual
void
updateSignal
(
const
state_type
&
state
);
virtual
void
fillVector
(
double
*
v
,
int
i
)
const
;
virtual
uint
getOutputNumber
()
const
{
return
2
;}
virtual
std
::
pair
<
int
,
int
>
getOutputSize
(
int
i
=
0
)
const
{
return
i
?
std
::
make_pair
(
2
,
m_cellPolarity
.
size
())
:
std
::
make_pair
(
1
,
m_polarity
.
size
());}
};
#endif
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