=BIOP Channel Tools=
{F5942397, size=full, float, layout=right}
This ActionBar can:
- set **LookUp Tables** (LUT, ie false colors of the channels) for each channel
- set **Brightness & Contrast** of the current image or of a whole folder for each channel.
- create a //complex// **Montage Image** of the channels
Each modification can be applied indiviually on :
- the current image {key Apply_to_image}
- a defined folder {key Apply_to_Folder...}
for each section:
- **LookUp Table Modification**
- **Brightness & Contrast Modification**
- **Montage Settings**
Otherwise modification(s) can be applied together (if previously defined ) using the section `All at once...` on :
- the current image {key Apply_to_image}
- a to be defined folder {key Apply_to_Folder...}
(IMPORTANT) An image should be open so the program knows how many channels there are to process.
(NOTE) It may be obvious, BUT processed images should have the same number of channels and come from the same batch (staining, acquisition... )
=1.Parameters =
Parameters are visible in an independent window.
They can be saved as a text file {key Save_Parameters}
and loaded to be reused {key Load_Parameters}
{F5942572, size=full}
=2.LookUp Table Modification=
==2.a.Channels LUT selection ==
{F5942669, size=full}
==2.b.Current Image ==
{F5942763, size=full}
==2.c.Folder ==
{F5942755, size=full}
=3.Brightness & Contrast Modification=
==3.a.B&C Selection ==
{F5942927, size=full}
==3.b.Current Image ==
Please c.f. 2.b
==3.c.Folder ==
Please c.f. 3.b
=4.Montage Settings=
Many options are available, please find here (just) some examples.
==4.a.Default ==
{F5942995, size=full}
==4.b. Move scale bar ==
{F5943013, size=full}
==4.c. Montage Border - Space between images ==
{F5943029, size=full}
==4.d. Make a square Montage ==
{F5943050, size=full}
==4.e. Individual Channel with Gray LUT ==
{F5943075, size=full}
==4.f. Advanced Montage ==
{F5943111, size=full}
==4.g. Add Legend ==
{F5943137, size=full}
= HELP =
For futher help please [[ https://biop.epfl.ch/INFO_Facility.html#staff | contact ]] us or open an [[ https://github.com/PTBIOP/ijab-biop-ihc-ratioquanti/issues |issue]] on github.
| Main Developer | Romain Guiet , Oliver Burri|
| Maintainers | Romain Guiet, Oliver Burri|