Change Details

= First Time Setup = Create environment virtualenv --system-site-packages -p python3 env-biop-tf2 == Activate environment == source env-biop-tf2/bin/activate == Install TF == ``` module load python gcc/8.4.0-cuda mvapich2/2.3.4-cuda py-tensorflow pip install ipython tensorboard ``` == Test == ipython import tensorflow as tf = Run on the Cluster = Request time as ptbiop user `salloc -t 2:0:0 -A ptbiop` Find allocated node login to the allocated node srun --pty bash Check status of node `htop` load gcc cuda cudnn python activate virtualenv run script NOTE: Nicola will update on the Jupyter Notebook setup and Oli needs to fix the fact that his account does not have qos=gpu

= First Time Setup = Create environment `virtualenv --system-site-packages -p python3 env-biop-tf2` == Activate environment == source env-biop-tf2/bin/activate == Install TF == ``` module load python gcc/8.4.0-cuda mvapich2/2.3.4-cuda py-tensorflow pip install ipython tensorboard ``` == Test == ipython import tensorflow as tf = Run on the Cluster = Request time as ptbiop user ``` salloc -t 2:0:0 -A ptbiop --exclusive squeue -u $USER ssh NAME OF ALLOCATED NODE module load python gcc/8.4.0-cuda mvapich2/2.3.4-cuda py-tensorflow source env-biop-tf2/bin/activate ``` Now you can run stuff NOTE: Nicola will update on the Jupyter Notebook setup

= First Time Setup = Create environment `virtualenv --system-site-packages -p python3 env-biop-tf2` == Activate environment == source env-biop-tf2/bin/activate == Install TF == ``` module load python gcc/8.4.0-cuda mvapich2/2.3.4-cuda py-tensorflow pip install ipython tensorboard ``` == Test == ipython import tensorflow as tf = Run on the Cluster = Request time as ptbiop user ```` salloc -t 2:0:0 -A ptbiop` Find allocated node --exclusive login to the allocated nodesqueue -u $USER srun --pty bashssh NAME OF ALLOCATED NODE Check status of node `htop`module load python gcc/8.4.0-cuda mvapich2/2.3.4-cuda py-tensorflow load gcc cuda cudnn pythonsource env-biop-tf2/bin/activate activate virtualenv``` Now you can run scripttuff NOTE: Nicola will update on the Jupyter Notebook setup and Oli needs to fix the fact that his account does not have qos=gpu