= Viewing Data from the web using the OMERO.iviewer web app =
= Viewing High Content Screening (HCS) Data =
OMERO allows the importing,===** Open an image in the OMERO.iviewer **===
OMERO.iviewer is a Web app that can be accessed from the [[ https://omero.epfl.ch/webclient/ | EPFL-OMERO webclient (OMERO.web) ]].
From OMERO.web, double-click on an Image thumbnail to open an Image in OMERO.iviewer.
This can also be done by hitting the {nav Full Viewer} button under the {nav Preview} tab from the right-hand pane, or with a right-clic on an image name from the left-hand tree and selecting {nav Open with... storing and > OMERO.iviewer}.
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===** OMERO.iviewing of screening data.er: the basics **===
{F19856779, Many common formats are supported as standardsize = full}
===** Synchronize multiple viewer windows **===
{F19856781, although some screens benefit from custom handling of their metadata before or after import.size = full}
A demonstration server showing published screening and other high volume data is available for public viewing at:===** Edit and save the rendering settings **===
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http://idr-demo.openmicroscopy.org===** Work with Regions of Interest in the iviewer **===
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= More documentation on this topic... =
To learn in more details (with step-by-step explanations) how to...
- open multidimensional images in OMERO.iviewer
- change rendering settings in OMERO.iviewer and scroll through z and t
- change the Lookup table and invert the displayed intensities for a particular channel
- use the Histogram feature
- zoom and rotate the image
- create a maximum intensity Projection and save it
# In OMERO.web, screens are represented in the data tree by dark grey folders.- save a current viewport as png in OMERO.iviewer
Expand the Screen folder, expand the Plate container and select a Run. - use and synchronize multiple viewer windows inside OMERO.iviewer
Click on a well in the plate shown on the centre pane to view the data in that well. - work with ROIs in OMERO.iviewer
Double-click on a well to open the image in the full viewer.
= More documentation on this topic...we recommend you to visit the [[ https://omero-guides.readthedocs.io/en/latest/iviewer/docs/index.html | dedicated page from the official OMERO guide ]].
= Viewing High Content Screening (HCS) Data =
OMERO allows the importing, storing and viewing of screening data. Many common formats (like the .xml and .tiff files generated by the PerkinElmer Operetta available at the BIOP) are supported and benefit from a plate and field view in OMERO.web:
{F19856952, =size=full}
To learn more about viewing data with the OMERO.iviewer, we recommend you to visit the [[ https://omero-guides.readthedocs.io/en/latest/iviewer/docs/index.html | dedicated page from the official OMERO guide ]](IMPORTANT) Please look at the //[[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/data-upload/file-formats/ | How to import to OMERO depending on the file-format ]]// guide to learn how to upload HCS data to OMERO.
In OMERO.web, screens are represented in the data tree by dark grey folders.
Expand the Screen folder, expand the Plate container and select a Run.
Click on a well in the plate shown on the centre pane to view the data in that well.
Double-click on a well to open the image in the full viewer.
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{icon hand-o-right} [[ https://c4science.ch/w/bioimaging_and_optics_platform_biop/image-processing/omero/annotating-data/ | NEXT STEP: Annotating data ]]
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