This page documents a way to register whole slide images in Fiji and analyze their result in QuPath.
= Installation
== ImageJ / Fiji
Update site : bigdataviewer-playground
For automated registration : install elastix and transformix.
Check that elastix and transformix are working in command line.
Indicate their executable location in Fiji
== QuPath
Install QuPath biop extensions. (ref to install)
Add required dependencies.
= Usage
== Create your QuPath project
TODO : ask for demo file
== Registration in Fiji
== Analysis in QuPath