HRM - Huygens Remote Manager

Updated 1,134 Days AgoPublic

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HRM - Huygens Remote Manager is a web interface, that allows multiple users to have access to one Huygens license running from a server. HRM allows you to create templates that you can easily re-use on a batch of files.

Using HRM from home

In the case of the BIOP this website is Restricted to the EPFL intranet so you need to make sure you are in the EPFL or connected with a VPN client.

Info and Mailing List

HRM has a full documentation hosted over at ReadTheDocs.
Moreover it has a mailing list if you want to subscribe.

1. For Users

1.1. Access

Huygens Remote Manager by BIOP is accessible on http://hrm-biop.epfl.ch/

You'll arrive on this page, where you can Login

1.2. Register

On the top right part of the page, click "Sign Up".

You'll arrive on this page, where you can fill the registration form.

Please use your GASPAR username (you can change your password)

and clic Register

The administrators will be notified by an e-mail and contact you for a training and/or grant you access and you'll receive an e-mail.

1.3 Usage

Deconvolution is a 6 steps procedure:

1. Upload images on our server
2. Start a job
3. Create (or select existing) template
4. Process batch of files
5. Download your deconvolved images
6. Clear your folder

1.3.1. Upload/download images on our server

You can access your HRM folder from the BIOP server on svraw1
Win
\\svraw1.epfl.ch\PTBIOP\HRM-Share\username\

macOS / Linux
smb://svraw1.epfl.ch/PTBIOP/HRM-Share/username/

Your Personal Folder
Your folder is accessible by you (and the administrators) and contains two subfolders Raw and Deconvolved.

You should copy your images into the Raw folder, using your explorer/finder

From the web interface, you can see the files recognised by HRM in your Raw folder.

1.3.2. Start jobs

Select Image

1. Select File Format
2. Select Files of Interest in the list of Available Images
3. Make the files go from Available Images to the list Selected images
4. Check the list of Selected images
5. Go to the next step

1.3.3. Select existing template (or create one)

Image Template

(create one) to be continued/created

Restauration Template

(create one) to be continued/created

1.3.4. Process batch of files

1. Select output file format

We invite you to use ics/ids format.

2. Check parameter
3. Start the Batch

Queue Manager

Queued

Started

Done

1.3.5. Results and Download your deconvolved images

1.3.5.1 Results, look at deconvolved images

Select your file

Click on Preview

Look at results & log

1.3.5.2 Download your deconvolved images

Your folder contains two subfolders Raw and Deconvolved.
As you can guess, you can find your Deconvolved images in the so-named folder.

1.3.6. Clear your folder

2. Administrators

Please go to the sub page admin