ijab-BIOP Channel Tools

Updated 750 Days AgoPublic

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BIOP Channel Tools

This ActionBar can:

• set LookUp Tables (LUT, ie false colors of the channels) for each channel
• set Brightness & Contrast of the current image or of a whole folder for each channel.
• create a complex Montage Image of the channels

Each modification can be applied indiviually on :

• the current image Apply to Image
• a defined folder Apply to Folder...

for each section:

• LookUp Table Modification
• Brightness & Contrast Modification
• Montage Settings

Otherwise modification(s) can be applied together (if previously defined ) using the section All at once... on :

• the current image Apply to Image
• a defined folder Apply to Folder...

0. Installation

Please make sure that the PTBIOP Updade Site as well as the IBMP-CNRS Update Site are enabled in FIJI. To learn how to enable update sites, click here.

You can find the tool under Plugins → BIOP → Generic Tools → BIOP Channel Tools

1.Parameters

Parameters are visible in an independent window.
They can be saved as a text file Save Parameters
and loaded to be reused Load Parameters

2.LookUp Table Modification

2.a.Channels LUT selection

2.b.Current Image

2.c.Folder

3.Brightness & Contrast Modification

3.a.B&C Selection

3.b.Current Image

Please c.f. 2.b

3.c.Folder

Please c.f. 3.b

4.Montage Settings

Many options are available, please find here (just) some examples.

4.a.Default

4.b. Move scale bar

4.c. Montage Border - Space between images

NOTE: to have white border make sure to set ForegroundColor to White

4.d. Make a square Montage

4.e. Individual Channel with Gray LUT

4.f. Advanced Montage

4.g. Add Legend

HELP

For futher help please contact us or open an issue on github.

Repository

You can find the source code in rBIOPCHTOOLS