Merge branch 'features/changes-to-address-joss-review' of gitlab.com…
848d37fab79a
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Authored by richart on Sep 28 2023, 21:13.

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Merge branch 'features/changes-to-address-joss-review' of gitlab.com:akantu/akantu into features/changes-to-address-joss-review

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Committed

richart

Sep 28 2023, 21:13

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gitlab-richart

Oct 3 2023, 09:19

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rAKA96c4bcb7ed57: Merge branch 'features/changes-to-address-joss-review' of gitlab.com…
rAKA45efee82a479: Bug fixes everywhere

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richart committed rAKA848d37fab79a: Merge branch 'features/changes-to-address-joss-review' of gitlab.com… (authored by richart).Sep 28 2023, 21:13

Merged Changes

This commit merges a very large number of changes. Only the first 50 are shown.

Commit	Author	Details	Committed
96c4bcb7ed57	richart	Merge branch 'features/changes-to-address-joss-review' of gitlab.com…	Sep 28 2023
97c3bc3dfc05	richart	Addapting documentation to new namings	Sep 28 2023
8524c2299432	richart	Adding aliasses names for dumpers	Sep 28 2023
7f1ce2cdb794	richart	Addapting examples to the new material synthax	Sep 28 2023
34e4ba79a439	saduruss	fix conflict	Sep 28 2023
58cff193772f	saduruss	phase-field c++ example	Sep 28 2023
3be830a7a67e	rferry	Merge branch 'features/changes-to-address-joss-review' of gitlab.com…	Sep 28 2023
92294d60b0f3	rferry	parallel example	Sep 28 2023
bef9a046a233	richart	Correcting nammings and compilation error	Sep 28 2023
d6dc8dd6c426	richart	Merge remote-tracking branch 'origin/master' into features/changes-to-address…	Sep 27 2023
32090c8a7659	saduruss	clean phasefield dynamic example	Sep 27 2023
50f12b059cf5	saduruss	Merge branch 'features/changes-to-address-joss-review' of gitlab.com…	Sep 27 2023
14568f3c5e4f	saduruss	finished python examples for phasefield	Sep 27 2023
e8b6dcdb8f43	rferry	adjust figure size	Sep 27 2023
c97d2639dee6	rferry	resolve merge conflict with python examples readme: add everything	Sep 27 2023
0bd9759faea2	rferry	python contact examples	Sep 27 2023
7ad57cd90f65	richart	Merge branch 'features/make_multiple_materials_independant_solid_mechanics'…	Sep 27 2023
4b03b5a2943a	saduruss	python example for phasefield	Sep 26 2023
8f5d1545d5db	rferry	adjust figure sizes	Sep 26 2023
478560935931	rferry	python solid mechanics + cohesive examples	Sep 26 2023
0e8e4e917704	richart	parentheses for multiline	Sep 14 2023
bdf80c2c5137	richart	more missing changes	Sep 14 2023
73d9497cc7ba	richart	Missing changes in damage non local	Sep 14 2023
d96fd9e6de8f	richart	Bug fix in the constructor order	Sep 14 2023
867bc5f52eed	richart	restoring test	Sep 14 2023
7cf2965a2846	richart	Switching to shared_ptr to correct undefined behaviors in the the python…	Sep 14 2023
312a347ad723	richart	Renaming compilation profile	Sep 14 2023
67530890544a	richart	Missing python interfaces [still a bug with internals in python]	Sep 13 2023
c8e866554c97	richart	Bug fix in the coupler interface	Sep 12 2023
391e62fd5b50	richart	Cleaning a bit the compilation variants	Sep 12 2023
254edd750e3a	richart	Merge branch 'master' into features/make_multiple_materials_independant_solid_m…	Sep 12 2023
dfb828d369b1	Nicolas Richart	Typo in the diffusion package	Aug 2 2023
5b14b292ffd6	Nicolas Richart	Merge branch 'master' into features/make_multiple_materials_independant_solid_m…	Aug 2 2023
c5ba2fb756f3	Nicolas Richart	Changing the default package name in cmake	Aug 2 2023
fb1f70bc20e0	Nicolas Richart	Bug fixes cohesive elements	Aug 1 2023
0b5b06918b93	Nicolas Richart	Fixing bugs and adding missing python interface	Jul 28 2023
4ad6a31e0a1a	Nicolas Richart	Moving heat transfer to diffusion model	Jul 25 2023
a91fc673e8e7	Nicolas Richart	[wip] Solved compilation issues	Jul 21 2023
3ef774152252	Nicolas Richart	Adding missing python interface and linting	Jul 20 2023
6c458a3a0a37	Nicolas Richart	Adding missing python interface and linting	Jul 20 2023
cd4ab7137869	Nicolas Richart	Fixing buges and reverting on registerInternal	Jul 20 2023
378e70d38150	Nicolas Richart	[wip] Reaching a compiling point need to debug now	Jul 14 2023
843d4082f874	Nicolas Richart	[wip] Changing more internalfields to shared_ptr	Apr 13 2023
49129e76fff7	Nicolas Richart	Merge remote-tracking branch 'origin/master' into…	Apr 11 2023
68a3bb87fbbb	Nicolas Richart	[wip] changing internal fields to std::shared_ptr [ci.skip]	Apr 11 2023
adcfbd6d923f	Nicolas Richart	Removing the material list generator	Mar 7 2023
5c7ea5a6ccda	Nicolas Richart	[wip] Making the branch compile after a rebase [ci.skip]	Mar 7 2023
4885348a2272	richart/Nicolas Richart	solving ambiguity	Feb 25 2023
c172a5f9a05d	richart/Nicolas Richart	Submit for testing	Feb 25 2023
b72e9e25088c	richart/Nicolas Richart	Advancing in compilation problems	Feb 25 2023

Changes (345)
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This commit is very large. Load each file individually.

		Path
M		.clang-tidy
M		.gitlab-ci.yml
M		.gitlab/ci.d/templates.yaml
M		cmake/AkantuExtraCompilationProfiles.cmake
M		cmake/AkantuMacros.cmake
M		cmake/AkantuPackagesSystem.cmake
M		cmake/AkantuTestsMacros.cmake
M		cmake/Modules/FindMETIS.cmake
D		cmake/material_lister.cc
M		doc/dev-doc/manual/diffusion.rst
D		doc/dev-doc/manual/heattransfermodel.rst
M		doc/dev-doc/manual/new-constitutive-laws.rst
M		examples/c++/README.rst
M		examples/c++/diffusion_model/CMakeLists.txt
V		examples/c++/diffusion_model/{heat_diffusion_dynamics_2d.cc ← heat_transfer_dynamics_2d.cc}
V		examples/c++/diffusion_model/{heat_diffusion_dynamics_3d.cc ← heat_transfer_dynamics_3d.cc}
V		examples/c++/diffusion_model/{heat_diffusion_static_2d.cc ← heat_transfer_static_2d.cc}
V		examples/c++/diffusion_model/{heat_transfer_dynamics_2d.cc → heat_diffusion_dynamics_2d.cc}
V		examples/c++/diffusion_model/{heat_transfer_dynamics_3d.cc → heat_diffusion_dynamics_3d.cc}
V		examples/c++/diffusion_model/{heat_transfer_static_2d.cc → heat_diffusion_static_2d.cc}
M		examples/c++/diffusion_model/material.dat
A		examples/c++/phase_field_model/README.rst
A	(dir)	examples/c++/phase_field_model/images/
A		examples/c++/phase_field_model/images/phase_field_clusters.png
M		examples/c++/phase_field_model/phase_field_notch.cc
M		examples/c++/solid_mechanics_model/new_material/local_material_damage.cc
M		examples/c++/solid_mechanics_model/new_material/local_material_damage.hh
M		examples/c++/solid_mechanics_model/parallel/README.rst
A	(dir)	examples/c++/solid_mechanics_model/parallel/images/
A		examples/c++/solid_mechanics_model/parallel/images/parallel.png
M		examples/c++/solid_mechanics_model/static/README.rst
M		examples/python/README.rst
A		examples/python/contact_mechanics_model/README.rst
A	(dir)	examples/python/contact_mechanics_model/images/
A		examples/python/contact_mechanics_model/images/compression.svg
A		examples/python/contact_mechanics_model/images/contact.gif
A		examples/python/phase_field_model/README.rst
A	(dir)	examples/python/phase_field_model/images/
A		examples/python/phase_field_model/images/phasefield-dynamic-geo.svg
A		examples/python/phase_field_model/images/phasefield-dynamic.png
A		examples/python/phase_field_model/images/phasefield-static-geo.svg
A		examples/python/phase_field_model/images/phasefield-static.png
M		examples/python/phase_field_model/phasefield-dynamic.py
M		examples/python/phase_field_model/phasefield-static.py
A		examples/python/solid_mechanics_cohesive_model/README.rst
A		examples/python/solid_mechanics_cohesive_model/cohesive/README.rst
A	(dir)	examples/python/solid_mechanics_cohesive_model/cohesive/images/
A		examples/python/solid_mechanics_cohesive_model/cohesive/images/plate.gif
A		examples/python/solid_mechanics_cohesive_model/cohesive/images/plate.svg
A		examples/python/solid_mechanics_cohesive_model/fragmentation/README.rst
A	(dir)	examples/python/solid_mechanics_cohesive_model/fragmentation/images/
A		examples/python/solid_mechanics_cohesive_model/fragmentation/images/fragmentation.gif
M		examples/python/solid_mechanics_model/CMakeLists.txt
M		examples/python/solid_mechanics_model/README.rst
M		examples/python/solid_mechanics_model/custom-material/bi-material.py
A		examples/python/solid_mechanics_model/dynamics/README.rst
A	(dir)	examples/python/solid_mechanics_model/dynamics/images/
A		examples/python/solid_mechanics_model/dynamics/images/bar.gif
A		examples/python/solid_mechanics_model/dynamics/images/bar_geom.svg
A		examples/python/solid_mechanics_model/eigen_modes/README.rst
A	(dir)	examples/python/solid_mechanics_model/eigen_modes/images/
A		examples/python/solid_mechanics_model/eigen_modes/images/eigen_modes.png
M		examples/python/solid_mechanics_model/plate-hole/README.rst
A		examples/python/solid_mechanics_model/solver_callback/README.rst
A	(dir)	examples/python/structural_mechanics_model/images/
A		examples/python/structural_mechanics_model/images/displacements.png
A		examples/python/structural_mechanics_model/images/displacements_softening.png
M		extra_packages/extra-materials/package.cmake
M		extra_packages/extra-materials/src/material_FE2/solid_mechanics_model_RVE.cc
M		extra_packages/igfem/package.cmake
M		extra_packages/igfem/src/material_igfem/material_igfem_inline_impl.hh
M		packages/cohesive_element.cmake
M		packages/core.cmake
M		packages/damage_non_local.cmake
V		packages/{diffusion.cmake ← heat_transfer.cmake}
M		packages/embedded.cmake
V		packages/{heat_transfer.cmake → diffusion.cmake}
M		packages/solid_mechanics.cmake
M		python/CMakeLists.txt
M		python/py_aka_array.hh
M		python/py_aka_error.cc
M		python/py_akantu.cc
A		python/py_constitutive_law.cc
A		python/py_constitutive_law.hh
V		python/{py_constitutive_law_selector.cc ← py_material_selector.cc}
V		python/{py_constitutive_law_selector.hh ← py_material_selector.hh}
A		python/py_constitutive_laws_handler.hh
M		python/py_contact_mechanics_model.hh
M		python/py_fe_engine.cc
M		python/py_heat_transfer_model.cc
M		python/py_material.cc
V		python/{py_material_selector.cc → py_constitutive_law_selector.cc}
V		python/{py_material_selector.hh → py_constitutive_law_selector.hh}
M		python/py_mesh.cc
M		python/py_model.cc
M		python/py_model_couplers.cc
M		python/py_model_couplers.hh
M		python/py_phase_field_model.cc
M		python/py_phase_field_model.hh
M		python/py_solid_mechanics_model.cc
M		python/py_solid_mechanics_model_cohesive.cc
M		src/CMakeLists.txt
M		src/common/aka_common.hh
M		src/common/aka_error.cc
M		src/common/aka_error.hh
M		src/common/aka_types.hh
M		src/common/aka_types_eigen_matrix_base_plugin.hh
M		src/common/aka_types_eigen_plain_object_base_plugin.hh
D		src/common/aka_voigthelper.cc
M		src/common/aka_voigthelper.hh
M		src/common/aka_voigthelper_tmpl.hh
M		src/fe_engine/element_class_structural.hh
M		src/fe_engine/element_classes/element_class_hermite_inline_impl.hh
M		src/fe_engine/fe_engine.hh
M		src/fe_engine/fe_engine_template.hh
M		src/fe_engine/fe_engine_template_tmpl.hh
M		src/fe_engine/integration_point.hh
M		src/fe_engine/integrator_gauss.hh
M		src/fe_engine/integrator_gauss_inline_impl.hh
M		src/fe_engine/shape_functions.cc
M		src/fe_engine/shape_functions_inline_impl.hh
M		src/fe_engine/shape_lagrange_inline_impl.hh
P		src/io/dumper/dumpable.hh Copied to src/model/solid_mechanics/material_selector_tmpl.hh
M		src/io/dumper/dumpable_iohelper.hh
M		src/io/parser/parser.hh
M		src/mesh/element_group.cc
M		src/mesh/element_group.hh
M		src/mesh/element_type_map.cc
M		src/mesh/element_type_map.hh
M		src/mesh/element_type_map_tmpl.hh
M		src/mesh/mesh.cc
M		src/mesh/mesh.hh
M		src/mesh/mesh_inline_impl.hh
M		src/mesh_utils/cohesive_element_inserter_helper.hh
M		src/mesh_utils/mesh_partition/mesh_partition_scotch.cc
M		src/mesh_utils/mesh_utils_distribution.cc
M		src/mesh_utils/mesh_utils_distribution.hh
A	(dir)	src/model/common/constitutive_laws/
A		src/model/common/constitutive_laws/constitutive_law.hh
V		src/model/{common/constitutive_laws/constitutive_law_non_local_interface.hh ← solid_mechanics/materials/material_non_local.hh}
V		src/model/{common/constitutive_laws/constitutive_law_non_local_interface_tmpl.hh ← solid_mechanics/materials/material_non_local_tmpl.hh}
A		src/model/common/constitutive_laws/constitutive_law_selector.hh
A		src/model/common/constitutive_laws/constitutive_law_selector_tmpl.hh
A		src/model/common/constitutive_laws/constitutive_law_tmpl.hh
A		src/model/common/constitutive_laws/constitutive_laws_handler.hh
A		src/model/common/constitutive_laws/constitutive_laws_handler_tmpl.hh
V		src/model/{common/constitutive_laws ← solid_mechanics/materials}/internal_field.hh
V		src/model/{common/constitutive_laws ← solid_mechanics/materials}/internal_field_tmpl.hh
V		src/model/{common/constitutive_laws ← solid_mechanics/materials}/random_internal_field.hh
V		src/model/{common/constitutive_laws ← solid_mechanics/materials}/random_internal_field_tmpl.hh
P		src/model/common/dof_manager/dof_manager_default_inline_impl.hh Copied to multiple locations: src/model/phase_field/phase_field_model_inline_impl.hh src/model/phase_field/phasefield_inline_impl.hh
M		src/model/common/model_solver.cc
M		src/model/common/model_solver.hh
M		src/model/common/non_linear_solver/non_linear_solver_newton_raphson.cc
M		src/model/common/non_local_toolbox/neighborhood_base.cc
M		src/model/common/non_local_toolbox/neighborhood_base.hh
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion.cc
M		src/model/common/non_local_toolbox/neighborhoods_criterion_evaluation/neighborhood_max_criterion_inline_impl.hh
M		src/model/common/non_local_toolbox/non_local_manager.cc
M		src/model/common/non_local_toolbox/non_local_manager.hh
M		src/model/common/non_local_toolbox/non_local_manager_callback.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.cc
M		src/model/common/non_local_toolbox/non_local_neighborhood_base.hh
M		src/model/common/non_local_toolbox/non_local_neighborhood_tmpl.hh
P		src/model/common/solver_callback.cc Copied to src/model/solid_mechanics/material_selector.hh
M		src/model/common/solver_callback.hh
M		src/model/contact_mechanics/contact_detector.hh
M		src/model/contact_mechanics/contact_element.hh
M		src/model/contact_mechanics/contact_mechanics_model.hh
M		src/model/contact_mechanics/geometry_utils.hh
M		src/model/contact_mechanics/resolution.hh
M		src/model/contact_mechanics/resolution_utils.hh
M		src/model/contact_mechanics/resolutions/resolution_penalty.hh
M		src/model/contact_mechanics/resolutions/resolution_penalty_quadratic.hh
M		src/model/contact_mechanics/surface_selector.hh
A	(dir)	src/model/diffusion_model/
A		src/model/diffusion_model/diffusion_law.cc
A		src/model/diffusion_model/diffusion_law.hh
A		src/model/diffusion_model/diffusion_model.cc
V		src/model/{diffusion_model/diffusion_model.hh ← heat_transfer/heat_transfer_model.hh}
A		src/model/diffusion_model/heat_diffusion.cc
A		src/model/diffusion_model/heat_diffusion.hh
A		src/model/diffusion_model/heat_transfer_model.hh
D		src/model/heat_transfer
D		src/model/heat_transfer/heat_transfer_model.cc
V		src/model/{heat_transfer/heat_transfer_model.hh → diffusion_model/diffusion_model.hh}
M		src/model/model.cc
M		src/model/model.hh
M		src/model/model_couplers/cohesive_contact_solvercallback.hh
M		src/model/model_couplers/coupler_solid_cohesive_contact.cc
M		src/model/model_couplers/coupler_solid_cohesive_contact.hh
M		src/model/model_couplers/coupler_solid_contact.cc
M		src/model/model_couplers/coupler_solid_contact.hh
M		src/model/model_couplers/coupler_solid_contact_tmpl.hh
M		src/model/model_couplers/coupler_solid_phasefield.cc
M		src/model/model_couplers/coupler_solid_phasefield.hh
M		src/model/model_inline_impl.hh
M		src/model/model_options.hh
M		src/model/phase_field/phase_field_element_filter.hh
M		src/model/phase_field/phase_field_model.cc
M		src/model/phase_field/phase_field_model.hh
P		src/model/phase_field/phase_field_model_inline_impl.hh Copied from src/model/common/dof_manager/dof_manager_default_inline_impl.hh
M		src/model/phase_field/phasefield.cc
M		src/model/phase_field/phasefield.hh
P		src/model/phase_field/phasefield_inline_impl.hh Copied from src/model/common/dof_manager/dof_manager_default_inline_impl.hh
V		src/model/{phase_field/phasefield_selector.hh ← solid_mechanics/solid_mechanics_model_tmpl.hh}
V		src/model/{phase_field/phasefield_selector_tmpl.hh ← solid_mechanics/materials/material_embedded/material_embedded_includes.hh}
M		src/model/phase_field/phasefields/phasefield_exponential.cc
M		src/model/phase_field/phasefields/phasefield_exponential.hh
M		src/model/phase_field/phasefields/phasefield_exponential_inline_impl.hh
M		src/model/solid_mechanics/material.cc
M		src/model/solid_mechanics/material.hh
M		src/model/solid_mechanics/material_inline_impl.hh
D		src/model/solid_mechanics/material_list.hh.in
P		src/model/solid_mechanics/material_selector.hh Copied from src/model/common/solver_callback.cc
P		src/model/solid_mechanics/material_selector_tmpl.hh Copied from src/io/dumper/dumpable.hh
V		src/model/{solid_mechanics/materials → common/constitutive_laws}/internal_field.hh
V		src/model/{solid_mechanics/materials → common/constitutive_laws}/internal_field_tmpl.hh
D		src/model/solid_mechanics/materials/material_core_includes.hh
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.cc
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage.hh
M		src/model/solid_mechanics/materials/material_damage/material_anisotropic_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_non_local.hh
M		src/model/solid_mechanics/materials/material_damage/material_damage_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_inline_impl.hh
M		src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.cc
M		src/model/solid_mechanics/materials/material_damage/material_marigo_non_local.hh
M		src/model/solid_mechanics/materials/material_damage/material_mazars.cc
M		src/model/solid_mechanics/materials/material_damage/material_mazars.hh
M		src/model/solid_mechanics/materials/material_damage/material_mazars_inline_impl.hh
M		src/model/solid_mechanics/materials/material_damage/material_mazars_non_local.hh
M		src/model/solid_mechanics/materials/material_damage/material_mazars_non_local_tmpl.hh
M		src/model/solid_mechanics/materials/material_damage/material_phasefield.cc
M		src/model/solid_mechanics/materials/material_damage/material_phasefield.hh
M		src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars.hh
M		src/model/solid_mechanics/materials/material_damage/material_von_mises_mazars_non_local.cc
M		src/model/solid_mechanics/materials/material_elastic.cc
M		src/model/solid_mechanics/materials/material_elastic.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.cc
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic.hh
M		src/model/solid_mechanics/materials/material_elastic_linear_anisotropic_inline_impl.hh
M		src/model/solid_mechanics/materials/material_elastic_orthotropic.cc
V		src/model/{solid_mechanics/materials/material_embedded/material_embedded_includes.hh → phase_field/phasefield_selector_tmpl.hh}
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement.hh
M		src/model/solid_mechanics/materials/material_embedded/material_reinforcement_tmpl.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.cc
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean.hh
M		src/model/solid_mechanics/materials/material_finite_deformation/material_neohookean_inline_impl.hh
V		src/model/{solid_mechanics/materials/material_non_local.hh → common/constitutive_laws/constitutive_law_non_local_interface.hh}
D		src/model/solid_mechanics/materials/material_non_local_includes.hh
V		src/model/{solid_mechanics/materials/material_non_local_tmpl.hh → common/constitutive_laws/constitutive_law_non_local_interface_tmpl.hh}
M		src/model/solid_mechanics/materials/material_plastic/material_drucker_prager.cc
M		src/model/solid_mechanics/materials/material_plastic/material_drucker_prager.hh
M		src/model/solid_mechanics/materials/material_plastic/material_linear_isotropic_hardening.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.cc
M		src/model/solid_mechanics/materials/material_plastic/material_plastic.hh
M		src/model/solid_mechanics/materials/material_thermal.cc
M		src/model/solid_mechanics/materials/material_thermal.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_standard_linear_solid_deviatoric.hh
M		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.cc
M		src/model/solid_mechanics/materials/material_viscoelastic/material_viscoelastic_maxwell.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox.hh
M		src/model/solid_mechanics/materials/plane_stress_toolbox_tmpl.hh
V		src/model/{solid_mechanics/materials → common/constitutive_laws}/random_internal_field.hh
V		src/model/{solid_mechanics/materials → common/constitutive_laws}/random_internal_field_tmpl.hh
M		src/model/solid_mechanics/materials/weight_functions/remove_damaged_weight_function_inline_impl.hh
M		src/model/solid_mechanics/solid_mechanics_model.cc
M		src/model/solid_mechanics/solid_mechanics_model.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/material_selector_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/cohesive_internal_field_tmpl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_bilinear.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_exponential.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_fatigue.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_friction.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_inline_impl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/constitutive_laws/material_cohesive_linear_uncoupled.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive.hh
D		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_includes.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/materials/material_cohesive_inline_impl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.cc
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_inline_impl.hh
M		src/model/solid_mechanics/solid_mechanics_model_cohesive/solid_mechanics_model_cohesive_parallel.cc
D		src/model/solid_mechanics/solid_mechanics_model_inline_impl.hh
M		src/model/solid_mechanics/solid_mechanics_model_io.cc
D		src/model/solid_mechanics/solid_mechanics_model_material.cc
V		src/model/{solid_mechanics/solid_mechanics_model_tmpl.hh → phase_field/phasefield_selector.hh}
M		src/solver/solver_vector.hh
M		src/solver/solver_vector_default.hh
M		src/solver/solver_vector_default_tmpl.hh
M		src/solver/solver_vector_petsc.cc
M		src/solver/solver_vector_petsc.hh
M		src/synchronizer/communication_buffer.hh
M		src/synchronizer/communication_buffer_inline_impl.hh
D		src/synchronizer/data_accessor.cc
M		src/synchronizer/data_accessor.hh
A		src/synchronizer/data_accessor_tmpl.hh
M		test/test_common/test_voigt_helper.cc
M		test/test_model/patch_tests/data/heat_transfer_input.dat
M		test/test_model/patch_tests/patch_test_linear_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.hh
M		test/test_model/patch_tests/patch_test_linear_heat_transfer_fixture.py
M		test/test_model/patch_tests/test_patch_linear_heat_transfer_explicit.py
M		test/test_model/patch_tests/test_patch_linear_heat_transfer_implicit.py
M		test/test_model/patch_tests/test_patch_linear_heat_transfer_static.py
M		test/test_model/test_common/test_non_local_toolbox/my_model.hh
M		test/test_model/test_common/test_non_local_toolbox/test_material.cc
M		test/test_model/test_common/test_non_local_toolbox/test_material.hh
M		test/test_model/test_common/test_non_local_toolbox/test_material_damage.cc
M		test/test_model/test_common/test_non_local_toolbox/test_material_damage.hh
M		test/test_model/test_common/test_non_local_toolbox/test_remove_damage_weight_function.cc
M		test/test_model/test_contact_mechanics_model/test_detector/test_detection_fixture.hh
M		test/test_model/test_contact_mechanics_model/test_explicit_dynamic.cc
M		test/test_model/test_contact_mechanics_model/test_explicit_friction.cc
M		test/test_model/test_phase_field_model/material_coupling.dat
M		test/test_model/test_phase_field_model/test_phase_field_anisotropic.cc
M		test/test_model/test_phase_field_model/test_phase_solid_coupling.cc
M		test/test_model/test_phase_field_model/test_phasefield_selector.cc
M		test/test_model/test_solid_mechanics_model/test_cohesive/test_cohesive_insertion/test_cohesive_insertion_along_physical_surfaces.cc
M		test/test_model/test_solid_mechanics_model/test_material_selector.cc
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.cc
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage.hh
M		test/test_model/test_solid_mechanics_model/test_materials/local_material_damage_inline_impl.hh
M		test/test_model/test_solid_mechanics_model/test_materials/test_damage_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_elastic_materials.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_finite_deformation.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_local_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.cc
M		test/test_model/test_solid_mechanics_model/test_materials/test_material_non_local/custom_non_local_test_material.hh
M		test/test_model/test_solid_mechanics_model/test_solid_mechanics_model_reassign_material.cc
M		third-party/akantu_iterators/include/aka_compatibilty_with_cpp_standard.hh
M		third-party/akantu_iterators/include/aka_named_tuple.hh