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i2b2.rc
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Sat, Jul 13, 20:42
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Mon, Jul 15, 20:42 (1 d, 21 h)
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R2664 SHRINE MedCo Fork
i2b2.rc
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#!/bin/bash
#########
# I2B2 Environment variables
#
# You can install by setting the i2b2 IP address and then using defaults.
# You MUST change the default passwords for production operation.
#
# To include this script for your logon, you can add a line to your bash profile like this
# vi ~/.bashrc
#########
COMMON_RC_FILE=common.rc
if [ -f ~/${COMMON_RC_FILE} ] ; then
source ~/${COMMON_RC_FILE}
elif [ -f ../../${COMMON_RC_FILE} ] ; then
source ../../${COMMON_RC_FILE}
else
echo "Either ~/${COMMON_RC_FILE} or ../../${COMMON_RC_FILE} must be present" ; exit -1
fi
# at-a-glance way to check whether we're using Oracle or Postgres
export I2B2_RDBMS=oracle
#
#WILL NEED TO CHANGE IF NOT IN I2B2 VM
#The i2b2 user Shrine should log in as.
export SHRINE_USER=shrine
#The plaintext password for the i2b2 user Shrine should log in as.
export SHRINE_OBFUSCATED_WEBCLIENT_PASSWORD=demouser
#SHRINE_OBFUSCATED_WEBCLIENT_PASSWORD hashed with i2b2's password-hashing algorithm
if [ -f ../I2b2PasswordCryptor.java ] ; then
export SHRINE_PASSWORD_CRYPTED=`javac ../I2b2PasswordCryptor.java && java -classpath ../ I2b2PasswordCryptor ${SHRINE_OBFUSCATED_WEBCLIENT_PASSWORD}`
fi
#The directory containing the JBoss application server that i2b2 runs in.
export JBOSS_HOME=/opt/jboss
if [ ! -d $JBOSS_HOME ] ; then
# try alternative versioned JBoss directory (used by newer VM images)
export JBOSS_HOME=( ${JBOSS_HOME}* )
fi
#A directory inside JBoss where important files will go.
export JBOSS_DEPLOY_DIR="${JBOSS_HOME}/standalone/deployments"
#Oracle SID that i2b2 will use
export I2B2_ORACLE_SID=xe #will need to change if not in i2b2 VM
#Password for the Oracle system user
export I2B2_ORACLE_SYSTEM_PASSWORD=demouser
#Directory containing the Oracle installation
export ORACLE_HOME=/usr/lib/oracle/xe/app/oracle/product/10.2.0/server
#Put Oracle on the path; sqlplus is requred.
export PATH=$PATH:${ORACLE_HOME}/bin
#Oracle user for the i2b2 PM cell
export I2B2_DB_PM_USER=i2b2pm
export I2B2_DB_PM_PASSWORD=demouser
#Oracle user for the i2b2 Hive
export I2B2_DB_HIVE_USER=i2b2hive
export I2B2_DB_HIVE_PASSWORD=demouser
export I2B2_DB_HIVE_JDBC_URL=jdbc:oracle:thin:@localhost:1521:${I2B2_ORACLE_SID}
#Java DataSource name used by the i2b2 hive
export I2B2_DB_HIVE_DATASOURCE_NAME=OntologyBootStrapDS
#Oracle user for the i2b2 ontology cell
export I2B2_DB_ONT_USER=i2b2metadata
export I2B2_DB_ONT_PASSWORD=demouser
export I2B2_DB_ONT_JDBC_URL=jdbc:oracle:thin:@localhost:1521:${I2B2_ORACLE_SID}
#Java DataSource name used by the i2b2 ontology cell
export I2B2_DB_ONT_DATASOURCE_NAME=OntologyDemoDS
#Oracle user for the Shrine ontology cell
export I2B2_DB_SHRINE_ONT_USER=shrine_ont
export I2B2_DB_SHRINE_ONT_PASSWORD=demouser
export I2B2_DB_SHRINE_ONT_JDBC_URL=jdbc:oracle:thin:@localhost:1521:${I2B2_ORACLE_SID}
#Java DataSource name used by the Shrine ontology cell
export I2B2_DB_SHRINE_ONT_DATASOURCE_NAME=OntologyShrineDS
#Oracle user for the i2b2 CRC cell
export I2B2_DB_CRC_USER=i2b2demodata
#Java DataSource name used by the i2b2 CRC cell
export I2B2_DB_CRC_DATASOURCE_NAME=QueryToolDemoDS
#END THINGS THAT WILL NEED TO CHANGE
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